Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H06
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.009
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.057
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    32   0.099
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.23 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    30   0.53 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    22   9.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 787 PXXPPXXXXPXPXXPPXXPXPXXXXXRXPPRPPPP 891
           P  PP    P P   P    P       PP PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 29.5 bits (63), Expect(2) = 0.009
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 787 PXXPPXXXXPXPXXPPXXPXPXXXXXRXPPRPPPP 891
           P  PP    P    PP  P P       PP PPPP
Sbjct: 750 PVPPPA---PIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = +2

Query: 797 PXXXXPPXPXX--PPXXXXXPXXPXAXPPAPPPPXXP 901
           P    PP P    PP     P    A PP PPPP  P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPP-PPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
 Frame = +2

Query: 797 PXXXXPPXPXXPPXXXXXPXXPXAXPPA-----PPPPXXPXP 907
           P     P P  PP        P   PP      PPPP  P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.0 bits (52), Expect(2) = 0.009
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 622 TPPPPPPXXXXPKKKKXKXXPXPXPP 699
           +PPPPPP    P        P P PP
Sbjct: 731 SPPPPPPAVIVP---TPAPAPIPVPP 753


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.057
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +2

Query: 788 PAXPXXXXPPXPXXPPXXXXXPXXPXAXPPAPPPPXXPXP 907
           PA P    P  P  PP     P  P   P AP PP  P P
Sbjct: 444 PAAPPLP-PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/70 (27%), Positives = 20/70 (28%)
 Frame = +3

Query: 432 PXXPPPXGGGXXXKKKXXXGGGGXFXXPXPPPPXXSXXXGXPXXXXPRXXXLFFFFXFPX 611
           P  PPP       K     G       P PPPP  +     P                P 
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP--------------PQ 356

Query: 612 XXXHPPPPPP 641
               PPPPPP
Sbjct: 357 GRSAPPPPPP 366


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = -3

Query: 911 KXGXGXXGGGGRGGXRXXXXXGXGXXGGXXGXGXXXXGGXXG 786
           + G G   GG RGG R     G G  GG  G      GG  G
Sbjct: 25  RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -3

Query: 905 GXGXXGGGGRGGXRXXXXXGXGXXGGXXGXGXXXXGGXXG 786
           G G   GGGRGG R       G  GG  G      G   G
Sbjct: 31  GRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 788  PAXPXXXXPPXPXXPPXXXXXPXXPXAXPPAPPPPXXPXP 907
            P  P    PP P  PP     P  P    PA   P  P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
 Frame = +2

Query: 788  PAXPXXXXPPX---PXXPPXXXXXPXXPXAXPPAPPPPXXPXP 907
            P  P    PP    P  PP     P  P A P    PP  P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 788 PAXPXXXXPPXPXXPPXXXXXPXXPXAXPPAPPP 889
           P+ P     P P  PP     P  P A PP PPP
Sbjct: 155 PSIPGFGNLPNPAMPPIPFL-PFNPAAQPPFPPP 187


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 821 PXXPPXXXXXPXXPXAXPPAPPPPXXP 901
           P  PP        P   PP PPPP  P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLP 247



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 625 PPPPPPXXXXPKKKKXKXXPXP 690
           PPPPPP    P+       P P
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMP 259


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 814 PXPXXPPXXPXPXXXXXRXPPRPPPP 891
           P    PP  P P       PP PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +2

Query: 797  PXXXXPPXPXXPPXXXXXPXXPXAXPPAPPPPXXP 901
            P    PP P         P      PP PPP   P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 22.2 bits (45), Expect(2) = 9.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 624  PPPPPPXXXXPXKK 665
            PPPPPP      KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108



 Score = 21.4 bits (43), Expect(2) = 9.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 606  PXXXXHPPPPPP 641
            P     PPPPPP
Sbjct: 1091 PSAVPPPPPPPP 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,800
Number of Sequences: 5004
Number of extensions: 26275
Number of successful extensions: 312
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)