Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_G21
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.32 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +1

Query: 481 PPPXXXXXXSFSPPXXPXPPKXXTXPPPXPXPGXXPXXXP 600
           P P      S   P    PP     PPP   PG  P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +1

Query: 508 SFSPPXXPXPPKXXTXPPPXPXPGXXPXXXPPPGGXLXXFPPXN 639
           S +P   P P +    P     P   P   PPPGG     P  N
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPN--PSQGPPPGGPPGAPPSQN 59



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = +2

Query: 521 PXXPXPPKXXXXPPPPPXPGXXXVXXPPQ 607
           P    PP     PPP   PG      P Q
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 563  GGGXVXFLGGXGXXGGEXE 507
            GGG +  LGG G  GG  E
Sbjct: 1706 GGGSLAGLGGLGGLGGAAE 1724



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 567  GGGGXXXXFGGXGXXGG 517
            GGGG     GG G  GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 563  GGGXVXFLGGXGXXGGEXE 507
            GGG +  LGG G  GG  E
Sbjct: 1702 GGGSLAGLGGLGGLGGAAE 1720



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 567  GGGGXXXXFGGXGXXGG 517
            GGGG     GG G  GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 536 PPKXXXXPPPPPXPG 580
           PPK    PPPP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
 Frame = -1

Query: 564 GGGXXXXFGGX--GXXGGGKXXGXXPXGGGGG 475
           GG      GG   G  GG    G    GGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,917
Number of Sequences: 438
Number of extensions: 7797
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)