Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_G15
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.87 
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   3.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   8.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 24/65 (36%), Positives = 35/65 (53%)
 Frame = +2

Query: 500 SSTLLLPRASTEPTARVSTCPLLTRSIPASSLTAMSSXKPL**R*LKPPRNRSSGNTTAS 679
           +ST      S  PT   ST P+ T ++P +S T+ +S  P       PP + SS  T++S
Sbjct: 335 TSTSCTTSTSIPPTGN-STTPV-TPTVPPTS-TSSTSTPP-------PPASTSSTGTSSS 384

Query: 680 PLLTT 694
           PLL+T
Sbjct: 385 PLLST 389



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = +2

Query: 500 SSTLLLPRASTEPTARVSTCPLLTRSIPASSLTAMSSXKPL**R*LKPPRNRSSGNTTAS 679
           +ST      S  PT   ST P+ T ++P +S T+ +S  P       PP + SS  T++S
Sbjct: 281 TSTSCTTSTSIPPTGN-STTPV-TPTVPPTS-TSSTSTPP-------PPASTSSTGTSSS 330

Query: 680 PLLTT 694
           PL +T
Sbjct: 331 PLPST 335


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +1

Query: 160 QPMVNLDMKMKE-LCIMKLLDHILQPTMFEDIKEIAKEY-NIEKSCDKYMN-----VDVV 318
           QP+ +L +++KE L  +K L    Q    E I +   ++ N+ K   K +      +D+V
Sbjct: 298 QPLYDLTIQLKEELQSLKRLSSEQQNLQHEQILQWKSDFLNVSKDHLKVLQQLRPLIDIV 357

Query: 319 KQFMEMYKMGM 351
           ++FM +Y  G+
Sbjct: 358 EKFMNVYFKGL 368


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = -3

Query: 654 RFLGGFSHLHHKGFXDDMAVNEEAGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFS 475
           + LGG SH+       D AV +EA + L      ET+   S++   + +        P +
Sbjct: 264 QILGGHSHIR------DFAVYDEASVSLEGGRYCETVGWLSIDGLSASNATRQYVGRPVT 317

Query: 474 HPARSPHENI 445
           +  R  + N+
Sbjct: 318 NETRQSYPNL 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,122
Number of Sequences: 5004
Number of extensions: 55198
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)