Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_G14
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...   322   2e-88
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419          316   1e-86
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    32   0.50 
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061     31   1.5  
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817...    30   2.7  
03_06_0610 + 35052455-35053429,35054936-35055511                       28   8.2  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score =  322 bits (791), Expect = 2e-88
 Identities = 155/190 (81%), Positives = 173/190 (91%), Gaps = 1/190 (0%)
 Frame = +1

Query: 205 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 381
           E+KLF RWS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10  EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69

Query: 382 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 561
           SLMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70  SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129

Query: 562 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELXNAAKGSSNSYAIKKKD 741
           RRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADEL NAAKGSSNSYAIKKKD
Sbjct: 130 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 189

Query: 742 ELERVAKSNR 771
           E+ERVAK+NR
Sbjct: 190 EIERVAKANR 199


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score =  316 bits (777), Expect = 1e-86
 Identities = 152/189 (80%), Positives = 171/189 (90%), Gaps = 1/189 (0%)
 Frame = +1

Query: 208 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 384
           +KLF  WS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12  VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71

Query: 385 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 564
           LMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72  LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131

Query: 565 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELXNAAKGSSNSYAIKKKDE 744
           RQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADEL NAAKGSSNSYAIKKKDE
Sbjct: 132 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE 191

Query: 745 LERVAKSNR 771
           +ERVAK+NR
Sbjct: 192 IERVAKANR 200


>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 650 LNAASRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPE 513
           L+A+SR P  + +I    RR+G + +  RR+ P +P     +R PE
Sbjct: 49  LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94


>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
          Length = 875

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/92 (25%), Positives = 39/92 (42%)
 Frame = +1

Query: 148 EAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 327
           +AGS+ V   S   + D+ E+K  G       + S  S+ D  +V E      P S+ R 
Sbjct: 578 DAGSIEVPVSSDCVSGDVDEVKSNGDLKSIHDETSPTSILD--TVFEDSNSNEPESSRRT 635

Query: 328 AHKRFRKAQCPIVERLTNSLMMHGRNNGKKLM 423
           +       +CP ++ +  S      N+G  L+
Sbjct: 636 SCTERVALRCPAIDSVARSFSWEDTNSGSPLL 667


>01_07_0219 +
           42079095-42079399,42079584-42079728,42081695-42081739,
           42082150-42082265,42082913-42083012,42083103-42083138,
           42083301-42083351,42083431-42083565
          Length = 310

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 562 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELXNAAKGSSNS 720
           RR+AV  + +RR+  A WL   GAR A  R         A E+  +A G   S
Sbjct: 9   RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58


>03_06_0610 + 35052455-35053429,35054936-35055511
          Length = 516

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -1

Query: 258 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVVPVLLGHDWYFSITK 91
           ++   ++V TP A  L F      GGLW  +G  +  AAC+  V++ V+   DW+    +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475

Query: 90  *K 85
            K
Sbjct: 476 AK 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,908,945
Number of Sequences: 37544
Number of extensions: 447676
Number of successful extensions: 1030
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)