Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_G09
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.033
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.043
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.057
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.27
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 31 0.30
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.30
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.53
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.2
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 29 1.2
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 29 1.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 2.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.7
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 3.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 4.4
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 26 6.5
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 8.6
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.9 bits (74), Expect = 0.033
Identities = 21/52 (40%), Positives = 21/52 (40%)
Frame = -3
Query: 826 GGXGGGXXXXRXXXRXGGXGVXAWXXGXXXGXGXRXGGGGGXGGXXXXKGGA 671
GG GGG R R G G G G R G GG GG KGGA
Sbjct: 26 GGFGGGRGGARGGGRGGARG------GRGGRGGARGGRGGSSGGRGGAKGGA 71
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = -3
Query: 826 GGXGGGXXXXRXXXRXGGXGVXAWXXGXXXGXGXRXGGGGGXGGXXXXKGGAVXXGGG 653
G GG GG A G G R G GG GG GG GG
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 730 GXRXGGGGGXGGXXXXKGGAVXXGGG 653
G R G GG GG GG GGG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGG 31
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 748 GXXXGXGXRXGGGGGXGGXXXXKGGAVXXGGG 653
G G R G GG GG +GGA G G
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRG 41
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.5 bits (73), Expect = 0.043
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPP 779
P P APP P PPPPP P P P A P P
Sbjct: 1690 PPVRPQSAAPPQMSA--PTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 30.7 bits (66), Expect = 0.30
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPPXRXPXP 737
P PPP + P PP P PP P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.057
Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPPXR-XPXPXXXPXXHAXTPXPPXRXXXLXXXXPPPXP 824
P PPP P P PPP P P P P A PP PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP----------PPPPP 782
Query: 825 P 827
P
Sbjct: 783 P 783
Score = 32.3 bits (70), Expect = 0.100
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +3
Query: 672 APPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPPXPP 827
+PP P P P P P P P PP PPP PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect(2) = 0.27
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Frame = +3
Query: 657 PPXXTAP----PXXXXXPPXPPPPP 719
PP AP P PP PPPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPPXRXP 731
P PP T P PPPPP P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPP 248
Score = 22.6 bits (46), Expect(2) = 0.27
Identities = 12/43 (27%), Positives = 13/43 (30%)
Frame = +3
Query: 699 PXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPPXPP 827
P P PPP P + P P L P PP
Sbjct: 234 PLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPP 276
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 30.7 bits (66), Expect = 0.30
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 209 ELTPTQVKDQPSVTFEAEADAFYTLVFTDPDNYDGPELVYREWHHWLVGN 358
E P K E E D + VFTDPD D +Y H WL+G+
Sbjct: 201 EADPNSQKALAKQILEQELDMIHQAVFTDPD--DSSVWIY---HRWLMGH 245
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Frame = +3
Query: 669 TAPPXXXXXPPXPP----PPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPPXPP 827
+A P PP P PP P P P A P P + + PPP P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Frame = +3
Query: 654 PPPXXTAPPXXXXXPPXP---PPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPPXP 824
PP PP PP P PP P P P P +P PP P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLP-PPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Query: 825 P 827
P
Sbjct: 203 P 203
Score = 25.8 bits (54), Expect = 8.6
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Frame = +3
Query: 654 PPPXXTAPPXXXXXPPXPPPPP---------XRXPXPXXXPXXHA-----XTPXPPXRXX 791
PP + P PP PPPP P P HA +P P R
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGP 243
Query: 792 XLXXXXPPPXPP 827
+ PP PP
Sbjct: 244 SIPSASVPPVPP 255
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.53
Identities = 15/54 (27%), Positives = 16/54 (29%)
Frame = +3
Query: 657 PPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPP 818
PP PP PPP P + P PP R PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 29.9 bits (64), Expect = 0.53
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTP 770
P PP APP P PP PP P P P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPP-AAPAPPPAPAPAPAAP 487
Score = 29.5 bits (63), Expect = 0.70
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPX--------PPPPPXRXPX---PXXXPXXHAX-TPXPPX-RX 788
P PPP +AP PP PP PP P P P +A T PP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Query: 789 XXLXXXXPPPXPP 827
L PP PP
Sbjct: 421 PSLPPSAPPSLPP 433
Score = 29.5 bits (63), Expect = 0.70
Identities = 24/94 (25%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Frame = +3
Query: 549 PSKVXPARPPXXXXXXXXXXXXXXXXXXXXXXXPXPPPXXTAPPXXXXXPPX-PPPPPXR 725
P + PA PP P PP +APP P PP PP
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP--SAPPSLPMGAPAAPPLPPSA 453
Query: 726 XPXPXXXPXXHAXTPXPPXRXXXLXXXXPPPXPP 827
P A P PP P P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPPXPP 827
P PPP PP P PP R P P T P PP PP
Sbjct: 337 PPPPP----PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/58 (36%), Positives = 22/58 (37%)
Frame = -3
Query: 826 GGXGGGXXXXRXXXRXGGXGVXAWXXGXXXGXGXRXGGGGGXGGXXXXKGGAVXXGGG 653
GG GGG GG G G G G GGG GG +GG GGG
Sbjct: 191 GGFGGGSGGPPPGP--GGFGGFGGFGGEGHHHGGHGGFGGGPGGF---EGGPGGFGGG 243
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = -3
Query: 826 GGXGGGXXXXRXXXRXGGXGVXAWXXGXXXGXGXRXGGGGGXGG 695
GG GGG G G + G G G GGG GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 256 LKSDRRLILHL-CRSQLISLRRYSTARVFKLN 164
LK D RL++H C S ISL+R V KL+
Sbjct: 289 LKVDTRLVVHAYCHSDFISLKRIKELEVEKLS 320
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 38 LRFEYF-FWRS-YRHDVLIMSLVAQAFEASKIVPD 136
L+ E F FW+S YR D+LI +L FE+ IVPD
Sbjct: 115 LKEENFDFWKSQYRSDILINNLTETLFES--IVPD 147
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPP 716
P PPP PP PP PPPP
Sbjct: 11 PPPPPPGFEPPSQ---PPPPPPP 30
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPP 719
P PPP PP P PPPPP
Sbjct: 9 PPPPP----PPPGFEPPSQPPPPP 28
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPP 719
P PP PP PPPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPPXPP 827
P P P APP PP P P P A P P + PP P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA--PPVPKPSVGVPPVPPPSTAP 1217
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Frame = +3
Query: 648 PXPPPXXTAPP---XXXXXPPXPPP---PPXRXPXPXXXPXXHAXTPXPP 779
P PP APP PP PPP PP P P PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 26.2 bits (55), Expect = 6.5
Identities = 21/93 (22%), Positives = 25/93 (26%)
Frame = +3
Query: 498 LPTXSIDGPASFSTNXFPSKVXPARPPXXXXXXXXXXXXXXXXXXXXXXXPXPPPXXTAP 677
+P + P S++ PS P P P P P AP
Sbjct: 1043 VPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAP 1102
Query: 678 PXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXP 776
P PP P P P A P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSV-AAPPVP 1134
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXP 776
P P P APP P P P P P P P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPP-PPPXRXPXPXXXPXXHAXTPXPP 779
P PPP TAPP PP P P P P A + P
Sbjct: 1209 PVPPPS-TAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +3
Query: 648 PXPPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPPXPP 827
P P P APP P PP P P + P P + PP P
Sbjct: 1141 PVPKPSVAAPP--VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 217 SQLISLRRYSTARVFKLNVLSWSDGNNIRHYFASFECLCY 98
S++ L Y L +L W + NN+R F ECLC+
Sbjct: 263 SRMDELSNYERIEQLALYLLCWGEANNVR--FMP-ECLCF 299
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = +3
Query: 654 PPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPP 818
PPP P PP P P P P PP PPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = +3
Query: 654 PPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPP 818
PPP P PP P P P P PP PPP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = +3
Query: 654 PPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPP 818
PPP P PP P P P P PP PPP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = +3
Query: 654 PPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPP 818
PPP P PP P P P P PP PPP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = +3
Query: 654 PPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPP 818
PPP P PP P P P P PP PPP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = +3
Query: 654 PPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPP 818
PPP P PP P P P P PP PPP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = +3
Query: 654 PPPXXTAPPXXXXXPPXPPPPPXRXPXPXXXPXXHAXTPXPPXRXXXLXXXXPPP 818
PPP P PP P P P P PP PPP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 134 DVIPVAPTKNIELKYPSGAIASQGNELTPTQVK 232
D+I TK +E+ +P GA LTP VK
Sbjct: 994 DLISKGATKPLEIAFPDGASILVAFRLTPVPVK 1026
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3
Query: 657 PPXXTAPPXXXXXPPXPPPPP 719
P T+ P P PPPPP
Sbjct: 892 PNDATSLPTIITHPTPPPPPP 912
Score = 21.4 bits (43), Expect(2) = 4.4
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 696 PPXPPPPPXRXP 731
P PPPPP P
Sbjct: 942 PAFPPPPPPPPP 953
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 6.5
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 98 VAQAFEASKIVPDV-IPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADAF 274
VAQ + + PD + VA +N EL++ S GNELT P T + + +
Sbjct: 332 VAQHITSLAVHPDGNLFVAGLENGELRFFE---TSSGNELTKFGPHSSPVKTLQFGENGY 388
Query: 275 YTLVFTDPDN 304
+ +V T+ D+
Sbjct: 389 WLVVTTNDDS 398
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Frame = +3
Query: 522 PASFSTNXFPSKVXPARPPXXXXXXXXXXXXXXXXXXXXXXXPXP--PPXXTAPPXXXXX 695
PA TN FPS+V P P P PP P
Sbjct: 122 PAVGKTNTFPSQVPNMFGPPLYHPAATAPSEFMPSIPGFGNLPNPAMPPIPFLPFNPAAQ 181
Query: 696 PPXPPP 713
PP PPP
Sbjct: 182 PPFPPP 187
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 220 RSQLISLRRYSTARVFKLNVLSWSDGNNIR 131
RS + S+ ++ A+ L +L W + NN+R
Sbjct: 354 RSHMRSMTQFERAQQIALWLLLWGEANNVR 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,243
Number of Sequences: 5004
Number of extensions: 49598
Number of successful extensions: 459
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -