Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_G04
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.20 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.5  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    27   3.3  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    27   4.3  
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    26   5.7  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   5.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   10.0 
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   10.0 

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 294 PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGCRP 193
           P+ P  PS+  P  PK  PPP+  + V +   RP
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRP 218


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 285 PKSPS-SFCPKVPKTLPPPICLSQVTS 208
           P SP  SF  +VP  +PPP+C   V S
Sbjct: 165 PISPDYSFPLRVPINIPPPLCTPSVVS 191


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -1

Query: 271 IVLSQSAKDLASPHLFVPSDVTRVSALRIAR*SSNLPRNQKVRKLLR 131
           I L++SAK+     +FVP +   +  +RIA   +  P+ +KV +LLR
Sbjct: 69  IRLNRSAKNKGD--IFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLR 113


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 239 GKVFGTLGQNDDGLFGKAGYNR-EIFNDDRGKLTGQAYGTRVLGPGGDSTNYG 394
           GK  G +G + D     +  +R   F   RG     +Y TRV G GG  T+YG
Sbjct: 166 GKFIG-VGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 71  YNSK*IQICFISSLQLWCVLTQKFTDLL 154
           Y+ K +++  +S +  W VLTQ +TD L
Sbjct: 153 YHRKQMELQMLSFVAEWLVLTQHYTDAL 180


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 525 AEKWVFLSRSHTPEPDAVIPDLPPICLFRSIVACAFLF 412
           AEKWV L+    P  D V+  +   C    +    F F
Sbjct: 357 AEKWVLLNGQRCPTCDRVVERIDGCCHMNCLCGTHFCF 394


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 489 VCGIWIRTPTFLPVVWSRRSSVTKDQTS 572
           + G+ IR   F P V S +S + KDQ+S
Sbjct: 635 MAGLDIRKEPFTPAVPSAKSGLKKDQSS 662


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 146 DLLITRKITRSAGNPQGRHPRDVTWDKQMGGGKVFGTLGQNDDGLFG 286
           D+LIT   T + G    R P+DVT   Q+    ++G++G +   +FG
Sbjct: 387 DVLITETGTANFGVLDCRFPKDVTAISQV----LWGSIGYSVGAMFG 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,028
Number of Sequences: 5004
Number of extensions: 72256
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)