Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_G04
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0378 + 2826421-2826427,2827286-2827375,2827400-2827639,282...    30   2.6  
11_06_0610 - 25449085-25453284                                         29   3.4  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    29   4.5  
10_08_0226 - 16001958-16002527                                         29   6.0  
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910...    28   7.9  
05_03_0164 - 9078814-9079908                                           28   7.9  

>07_01_0378 +
           2826421-2826427,2827286-2827375,2827400-2827639,
           2827722-2828035,2828604-2828696,2828789-2828977
          Length = 310

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 3/113 (2%)
 Frame = +2

Query: 161 RKITRSAGNPQGRHPRDVTWDKQMGGGKVFGTLGQN---DDGLFGKAGYNREIFNDDRGK 331
           R ++ +  NP  R      W +  G G  +G  G N     G FG    +  ++ +    
Sbjct: 82  RNLSANVNNPVSRPMPQRPWQQTSGYGNTYGGYGSNMYSSYGGFGNTYGSGGLYGNSMYS 141

Query: 332 LTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 490
             G  YG  + G  G    YGG +  +             +GG  GM   G G
Sbjct: 142 SYGGGYGGSLYGGSG---MYGGGMYNSGLGGSYGGYGMGGMGGMGGMGGMGMG 191


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 24/48 (50%), Positives = 29/48 (60%)
 Frame = -2

Query: 363  KTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLS 220
            K+L P A PVSLP   +K SL  P  P +P S  P V K+LPPP  +S
Sbjct: 1262 KSLPPPA-PVSLPPPPVK-SL--P--PPAPVSLPPPVVKSLPPPAPVS 1303


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 380  STNYGGRLDWANKNAQATIDLNRQI 454
            S+ +GG L W N + ++T+D +RQ+
Sbjct: 960  SSLHGGSLPWKNTDFESTVDFDRQL 984


>10_08_0226 - 16001958-16002527
          Length = 189

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
 Frame = +2

Query: 233 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQA-YGTRVLGPGGDSTNYGGRLDW 409
           G G   G++ Q   G     G    +     G + G   YGT      G +   GG    
Sbjct: 91  GQGSSSGSVSQGG-GSASAGGGGGGVAGGQAGGVDGSGGYGTGTGSGTGSAAADGGASPT 149

Query: 410 ANK---NAQATIDLNRQIGGRSGMTASGSG 490
           ++    NA AT D N   GG+SG + SG G
Sbjct: 150 SSPPYANANATGDGNGNGGGQSGGSGSGGG 179


>11_06_0143 +
           20589574-20589684,20590256-20590873,20590943-20591010,
           20591159-20591234,20591311-20591372,20591452-20591603,
           20591889-20592052,20592129-20592317,20592417-20592538,
           20592620-20592827,20593238-20593291,20593457-20593626,
           20594265-20594355,20595405-20595529,20596372-20596444,
           20596822-20596914,20597482-20597728,20598305-20598364,
           20598461-20598590,20599008-20599014
          Length = 939

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 233 GGGKVFG-TLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDS-TNYGGRLD 406
           G G   G T+G +DDG   K   + +  +   G+  G A G R  G GG    N+G R D
Sbjct: 177 GAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNFGERKD 236

Query: 407 WANK 418
             +K
Sbjct: 237 PPHK 240


>05_03_0164 - 9078814-9079908
          Length = 364

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 359 VLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAGGMV 538
           V+G  G +++    LD+ +  A A +  NR+ G ++     G  +  L  N H S G   
Sbjct: 85  VVGDAGATSDGLLLLDFTDIRATARVVANRRAGAQAQAQQQGKKLTGLSFNLHNSRGDTQ 144

Query: 539 SKEFG--HKRPDV 571
            +E    +  PD+
Sbjct: 145 ERELAGVNTNPDI 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,921,083
Number of Sequences: 37544
Number of extensions: 515820
Number of successful extensions: 1435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)