Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_G03
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    36   0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.042
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.097
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.44 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   2.7  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +1

Query: 193 WVREFAIRSSALAQQSTYSKRLKD*STVLNQRKTNKIR*SVVVEQSEIER*SFKKKYHRK 372
           ++R F  RSS  ++ S   K ++D      +R+T +   + V+EQ ++     K+  H  
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHIN 664

Query: 373 DVIVRP 390
           DV VRP
Sbjct: 665 DVYVRP 670


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 802 PXPPPXPPXXXXXXXXPXPPPPP 870
           P PPP PP        P PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 32.3 bits (70), Expect = 0.097
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 793 SPXPXPPPXPPXXXXXXXXPXPPPPP 870
           +P P P P PP        P PPPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = +1

Query: 796 PXPXPPPXP-PXXXXXXXXPXPPPPP 870
           P P P P P P        P PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 796 PXPXPPPXPPXXXXXXXXPXPPPPP 870
           P   PPP PP        P PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 796 PXPXPPPXPPXXXXXXXXPXPPPPP 870
           P   PPP PP          PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 794 PPXLXPPPXPRXXXXPXXPXXPPPP 868
           PP   PPP P     P     PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 795 PXXXXPPXXPAXXXXPXXPXXPPPP 869
           P    PP  P     P  P  PPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect(2) = 0.44
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 808 PPPXPPXXXXXXXXPXPPPPPXXXP 882
           PP   P        P PPPPP   P
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248



 Score = 22.2 bits (45), Expect(2) = 0.44
 Identities = 9/30 (30%), Positives = 11/30 (36%)
 Frame = +1

Query: 733 PPYXXXXXXLXPXXTXXXXXSPXPXPPPXP 822
           PP         P  +     +P P PPP P
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 795  PXXXXPPXXPAXXXXPXXPXXPPPPXXPPXP 887
            P    PP   A    P     PPPP  PP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/44 (27%), Positives = 14/44 (31%)
 Frame = +2

Query: 737  PXIXXXXXXSPXXXXXXXXPPXLXPPPXPRXXXXPXXPXXPPPP 868
            P +       P        PP +  PP P     P  P   PPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +3

Query: 759 PXPPXXXXXXXFPXXXXPPXXPAXXXXPXXPXXPPPPXXPPXP 887
           P PP        P    PP  P     P  P  P  P  P  P
Sbjct: 515 PQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAP 557



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +3

Query: 759 PXPPXXXXXXXFPXXXXPPXXPAXXXXPXXPXXPPPPXXPPXP 887
           P PP        P    PP  P     P  P  P  P  P  P
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVP 617



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +3

Query: 759 PXPPXXXXXXXFPXXXXPPXXPAXXXXPXXPXXPPPPXXPPXP 887
           P PP        P    PP  P     P  P  P  P  P  P
Sbjct: 590 PQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAP 632


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/54 (25%), Positives = 15/54 (27%)
 Frame = +1

Query: 733  PPYXXXXXXLXPXXTXXXXXSPXPXPPPXPPXXXXXXXXPXPPPPPXXXPXXXP 894
            PP       + P         P P P   PP        P  PPP    P   P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/72 (23%), Positives = 18/72 (25%)
 Frame = +1

Query: 679  PXSPXYYXXPXFVXPXXLPPYXXXXXXLXPXXTXXXXXSPXPXPPPXPPXXXXXXXXPXP 858
            P  P     P    P  +PP         P         P P P   PP        P  
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133

Query: 859  PPPPXXXPXXXP 894
            P P    P   P
Sbjct: 1134 PVPSGAPPVPKP 1145


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 812 PPXPRXXXXPXXPXXPPPPXXXXPP 886
           PP  R    P  P  PPPP    PP
Sbjct: 214 PPKFRHKKVPRGPPSPPPPVLHSPP 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,217
Number of Sequences: 5004
Number of extensions: 47914
Number of successful extensions: 252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)