Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F24
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    30   2.8  
04_03_0214 + 12713865-12713973,12715780-12716011,12716556-127166...    29   3.6  
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666...    29   4.8  
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    28   8.4  

>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
 Frame = +2

Query: 320 HMRLAGFKDLGYSFV---AGGNGKIYEGAGWNHIGAHTLHYNNISIGIGFIG--DFREKL 484
           H R +   + GYSFV    GG G+I+ G  W         Y ++S  I   G  D+ +  
Sbjct: 377 HARESVDDNTGYSFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPS 436

Query: 485 PTQQALQAVQ-DFLACGVENNLLTEDYHVVGHQQLINTLSPGAVLQSXIESWPH 643
             Q A        + C  +  +   +Y   G    ++   P A   S ++  P+
Sbjct: 437 RDQYASSLYSVSIVTCMTKRTVFYGEYRCTGDGANLSDRVPYAQKLSDVQVLPY 490


>04_03_0214 +
           12713865-12713973,12715780-12716011,12716556-12716635,
           12716930-12717083,12717213-12717291,12717654-12717738,
           12718420-12718466,12720123-12720281
          Length = 314

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 512 QDFLACGVENNLLTEDYHVVGHQQLINTLSPGAVLQSXIESWPHWLDNARKVLG*YFI 685
           Q  LA  + +NLL+        + ++N+L PGAV  + +  W   L  A + +G YF+
Sbjct: 201 QSKLANILHSNLLSSHLKEQDAKVIVNSLHPGAVATNILHHWCP-LYGAIRAIGKYFV 257


>10_08_0371 + 17265691-17265788,17265873-17265971,17266586-17266628,
            17267250-17267321,17267400-17267495,17267609-17267842,
            17267914-17268097,17268247-17268358,17268447-17268533,
            17268703-17268841,17269628-17269718,17270045-17270154,
            17270309-17270413,17270982-17271055,17271379-17271454,
            17271786-17272022,17272419-17272490,17273082-17273153,
            17273240-17273304,17273306-17273383,17273384-17273486,
            17273769-17273858,17274873-17274980,17275063-17275113,
            17276126-17276203,17276284-17276346,17276944-17277140,
            17277243-17277312,17277640-17277828
          Length = 1030

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 257  VSNDCFTDEECLLSVNSLRQHHM--RLAGFKDLGYSFV--AGGNGKIYE 391
            ++ DC   + CL ++N+L  +H   RL G   L    +   G NGK+ E
Sbjct: 877  LNKDCDIVDRCLTAINALASYHFKERLGGRGGLSSQLMESEGSNGKLQE 925


>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 156 PNAAKFPSPNGVARSHVVNSP*RVLLTWW 242
           P+ A+F +P+   R H++ +    L  WW
Sbjct: 232 PSPARFTTPSATPRHHIITTKPSSLRIWW 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,398,556
Number of Sequences: 37544
Number of extensions: 572721
Number of successful extensions: 3044
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2763
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)