Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F24
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ...    34   0.11 
Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF273807-1|AAG15156.1|  416|Caenorhabditis elegans nuclear recep...    28   7.5  
AF016675-1|AAF02172.2|  416|Caenorhabditis elegans Nuclear hormo...    28   7.5  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    28   9.9  

>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y66H1B.3 protein.
          Length = 1084

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
 Frame = +2

Query: 374 NGKIYEGAGWNHIGAHTLHYNNISIGIGFI------GDFREKLPTQQALQAVQDFLACGV 535
           N K+  G  W  I    LHY   SI +G+I      GD +E+ P Q+ L  +++ L  G+
Sbjct: 116 NKKLILGLVWTLI----LHY---SISMGWIQEKREDGDNKEETPKQKLLNWIRNRLP-GM 167

Query: 536 ENNLLTEDYHV-VGHQQLINTLSPGAVLQSXIESWPHWLDN 655
             +  T D++  V    L+N+++PGA     +E W +W  N
Sbjct: 168 PISNFTSDWNDGVALGALVNSMAPGA-----LEDWENWSPN 203


>Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical
           protein F11D11.8 protein.
          Length = 221

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
 Frame = +2

Query: 263 NDCFTDEECLLS-VNSLRQHHMR-------LAGFKDLGYSFVAGGNGKIYE----GAGWN 406
           ++CF D ECLL+  NS   H+          A +KD+ YS V   +G IY      AGW+
Sbjct: 48  DECFEDSECLLAFFNSACFHYYTELPDATCPASYKDIKYS-VTSDSGDIYSWKKTDAGWS 106

Query: 407 H 409
           +
Sbjct: 107 Y 107


>Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical
           protein C17E4.3 protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 207 RRDSVPLHSVMGISPHSDAAFRVPKLTKNTNNNRDGATN 91
           R DS+P+  V+GISP   A F       N  ++ D + N
Sbjct: 244 RNDSIPIEPVVGISPVLVANFNRTSPDSNNTHHHDESRN 282


>AF273807-1|AAG15156.1|  416|Caenorhabditis elegans nuclear receptor
           NHR-59 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 24  IGNSLRFKLLDCIRQI*NRLQR 89
           +GN  +FK L+C   I NRL+R
Sbjct: 221 LGNDFKFKFLECTWNIWNRLER 242


>AF016675-1|AAF02172.2|  416|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 59 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 24  IGNSLRFKLLDCIRQI*NRLQR 89
           +GN  +FK L+C   I NRL+R
Sbjct: 221 LGNDFKFKFLECTWNIWNRLER 242


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 173 EFRRIRTLHSGFRN-SPRTPTIIETVQPTSLQPVLDLSNAIQQ 48
           +FRR+ TL S F+N SP   +     Q T ++ +L    AI Q
Sbjct: 216 DFRRLSTLFSNFQNLSPELQSFYNISQLTGIEKILREIQAIFQ 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,637,492
Number of Sequences: 27780
Number of extensions: 444459
Number of successful extensions: 1434
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)