Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F22
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    32   0.52 
07_03_0600 + 19866757-19867218,19867920-19868429                       29   6.5  
07_03_0821 + 21760655-21760912,21761158-21761328,21761850-217620...    28   8.5  

>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
            22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 229  AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRK 65
            A  I  +++G ++D     ++F+ +S       QS+DEN +  H  +  +YH +K
Sbjct: 985  ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039


>07_03_0600 + 19866757-19867218,19867920-19868429
          Length = 323

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 773 PPGKRAFXFWGPXPVSXPQXTPXPPXXF 856
           PP ++    WG  P   PQ  P PP  F
Sbjct: 62  PPPQQPPAMWGQPPPPPPQYAPPPPQQF 89


>07_03_0821 +
           21760655-21760912,21761158-21761328,21761850-21762026,
           21762165-21762242
          Length = 227

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -2

Query: 395 SYEILKYIVNTLFRY*FSKIFFTSHPRAPRERVRLEVRSALGA 267
           SY++    +NT+  Y +++ FFT   +  ++ V +E+RS L +
Sbjct: 178 SYKVQVLSLNTISFYGYAESFFTIEVKGEQDVVMVELRSLLSS 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,200,170
Number of Sequences: 37544
Number of extensions: 366970
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)