Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_F20
(841 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80223-5|CAB02321.1| 153|Caenorhabditis elegans Hypothetical pr... 32 0.58
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 31 1.0
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 31 1.0
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 31 1.0
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 31 1.0
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 31 1.0
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 31 1.0
U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical pr... 29 5.4
U41556-6|AAP68953.1| 248|Caenorhabditis elegans Hypothetical pr... 29 5.4
U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical pr... 29 5.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.4
U88169-11|AAB42238.2| 308|Caenorhabditis elegans C-type lectin ... 28 7.2
U58752-8|AAB00670.1| 308|Caenorhabditis elegans C-type lectin p... 28 9.5
>Z80223-5|CAB02321.1| 153|Caenorhabditis elegans Hypothetical
protein F26D10.12 protein.
Length = 153
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 282 YKKWVDAKKTCEMEGATFFXPDDKFEFDAV 371
+ + ++ K CE GA F DD FEF+AV
Sbjct: 47 FSSFRESVKNCEKRGAKLFHFDDSFEFEAV 76
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 31.1 bits (67), Expect = 1.0
Identities = 28/114 (24%), Positives = 30/114 (26%)
Frame = -3
Query: 830 GGXXXXPGGXXXPXXXGXPXXPXPXXVXXTGXXGGXKXXGXXGXQXXXXXXXXXGVXEXP 651
GG PG P G P P G G G G P
Sbjct: 1409 GGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLR------GEKGMP 1462
Query: 650 QXHXPXGGEXPXXLXNKXGXXXXPGXXGLKXXPXXGXXTQFXXFXXVXGFPGFP 489
P G + P L + G PG GL G F G PG P
Sbjct: 1463 GLDGPPGNDGPPGLPGQRGNDGYPGAPGLSGEKGMGGLPGFPGLDGQPGGPGAP 1516
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 31.1 bits (67), Expect = 1.0
Identities = 28/114 (24%), Positives = 30/114 (26%)
Frame = -3
Query: 830 GGXXXXPGGXXXPXXXGXPXXPXPXXVXXTGXXGGXKXXGXXGXQXXXXXXXXXGVXEXP 651
GG PG P G P P G G G G P
Sbjct: 1408 GGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLR------GEKGMP 1461
Query: 650 QXHXPXGGEXPXXLXNKXGXXXXPGXXGLKXXPXXGXXTQFXXFXXVXGFPGFP 489
P G + P L + G PG GL G F G PG P
Sbjct: 1462 GLDGPPGNDGPPGLPGQRGNDGYPGAPGLSGEKGMGGLPGFPGLDGQPGGPGAP 1515
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 31.1 bits (67), Expect = 1.0
Identities = 28/114 (24%), Positives = 30/114 (26%)
Frame = -3
Query: 830 GGXXXXPGGXXXPXXXGXPXXPXPXXVXXTGXXGGXKXXGXXGXQXXXXXXXXXGVXEXP 651
GG PG P G P P G G G G P
Sbjct: 1408 GGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLR------GEKGMP 1461
Query: 650 QXHXPXGGEXPXXLXNKXGXXXXPGXXGLKXXPXXGXXTQFXXFXXVXGFPGFP 489
P G + P L + G PG GL G F G PG P
Sbjct: 1462 GLDGPPGNDGPPGLPGQRGNDGYPGAPGLSGEKGMGGLPGFPGLDGQPGGPGAP 1515
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 31.1 bits (67), Expect = 1.0
Identities = 28/114 (24%), Positives = 30/114 (26%)
Frame = -3
Query: 830 GGXXXXPGGXXXPXXXGXPXXPXPXXVXXTGXXGGXKXXGXXGXQXXXXXXXXXGVXEXP 651
GG PG P G P P G G G G P
Sbjct: 1409 GGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLR------GEKGMP 1462
Query: 650 QXHXPXGGEXPXXLXNKXGXXXXPGXXGLKXXPXXGXXTQFXXFXXVXGFPGFP 489
P G + P L + G PG GL G F G PG P
Sbjct: 1463 GLDGPPGNDGPPGLPGQRGNDGYPGAPGLSGEKGMGGLPGFPGLDGQPGGPGAP 1516
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 31.1 bits (67), Expect = 1.0
Identities = 28/114 (24%), Positives = 30/114 (26%)
Frame = -3
Query: 830 GGXXXXPGGXXXPXXXGXPXXPXPXXVXXTGXXGGXKXXGXXGXQXXXXXXXXXGVXEXP 651
GG PG P G P P G G G G P
Sbjct: 1445 GGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLR------GEKGMP 1498
Query: 650 QXHXPXGGEXPXXLXNKXGXXXXPGXXGLKXXPXXGXXTQFXXFXXVXGFPGFP 489
P G + P L + G PG GL G F G PG P
Sbjct: 1499 GLDGPPGNDGPPGLPGQRGNDGYPGAPGLSGEKGMGGLPGFPGLDGQPGGPGAP 1552
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -1
Query: 826 GPXXXPGXXXXXXXXGXPPXP-PPXXXGXPGXXGXKXXXGXXG 701
GP PG G PP P PP G PG G G G
Sbjct: 193 GPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDG 235
>U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical
protein C25B8.4c protein.
Length = 145
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 240 YIESTESFYKIHTLYKKWVDAKKTCEMEGATFFXPDDKFEFDAVXTYW 383
++ ++S Y I + + +A+K C + AT F + + E+DAV ++
Sbjct: 62 WVRFSDSCYWIEQHKQSFAEAEKRCYEKNATLFVVNSQDEWDAVREHF 109
>U41556-6|AAP68953.1| 248|Caenorhabditis elegans Hypothetical
protein C25B8.4b protein.
Length = 248
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 240 YIESTESFYKIHTLYKKWVDAKKTCEMEGATFFXPDDKFEFDAVXTYW 383
++ ++S Y I + + +A+K C + AT F + + E+DAV ++
Sbjct: 98 WVRFSDSCYWIEQHKQSFAEAEKRCYEKNATLFVVNSQDEWDAVREHF 145
>U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical
protein C25B8.4a protein.
Length = 212
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 240 YIESTESFYKIHTLYKKWVDAKKTCEMEGATFFXPDDKFEFDAVXTYW 383
++ ++S Y I + + +A+K C + AT F + + E+DAV ++
Sbjct: 62 WVRFSDSCYWIEQHKQSFAEAEKRCYEKNATLFVVNSQDEWDAVREHF 109
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 829 GGPXXXPGXXXXXXXXGXPPXPPPXXXGXP 740
GGP P G PP PPP G P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 829 GGPXXXPGXXXXXXXXGXPPXPPPXXXGXP 740
GGP P G PP PPP G P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 829 GGPXXXPGXXXXXXXXGXPPXPPPXXXGXP 740
GGP P G PP PPP G P
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
>U88169-11|AAB42238.2| 308|Caenorhabditis elegans C-type lectin
protein 53 protein.
Length = 308
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 234 YTYIESTESFYKIHTLYKKWVDAKKTCEMEG 326
YT+ E+T+ YK + + DA+ C+ +G
Sbjct: 170 YTWFETTDFCYKTTVQFTNFNDARSACQADG 200
>U58752-8|AAB00670.1| 308|Caenorhabditis elegans C-type lectin
protein 52 protein.
Length = 308
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 234 YTYIESTESFYKIHTLYKKWVDAKKTCEMEG 326
YT+ E T+ YK Y + DA+ C+ +G
Sbjct: 170 YTWFELTDFCYKNTVQYTNFNDARSACQADG 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,983
Number of Sequences: 27780
Number of extensions: 240503
Number of successful extensions: 1080
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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