Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F18
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    36   0.029
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.62 
Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical pr...    31   1.1  
DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated...    31   1.1  
Z36752-6|CAA85327.1|  456|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucos...    29   3.3  
U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucos...    29   3.3  
DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide glyc...    29   3.3  
DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide glyc...    29   3.3  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   4.4  
Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    28   7.6  

>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +1

Query: 490 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
           +VT  T        ++P    TT   S + PP  ++T + +T+      V ST IAP+T 
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466

Query: 670 SNTT 681
            +TT
Sbjct: 467 PSTT 470


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 499 PKTKPARKSPGSLPPCWKTTE--FTSRSCPPRTNST*SSITRKVLVMTVSSTVIA 657
           PKT+P    P ++P CW+     F     PPR N+T   I  K       + V+A
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNTMPLIEDKCYAKLGDTLVMA 472


>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 189 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 302
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical
           protein C45B11.1a protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 280 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 101
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R     V
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135

Query: 100 S 98
           S
Sbjct: 136 S 136


>Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.11 protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 243 EYLKEKKGEVIKEA-VKRLIENGKRNTMDFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQ 413
           EY +    E  +   VK ++   K+N +D     WT+   E +KSY  F  + R  FTE 
Sbjct: 187 EYSRLVSNETSRNVFVKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE- 245

Query: 414 TVKLINKRDHHALKLI 461
             K  N+++ + + LI
Sbjct: 246 LQKRWNRKNEYIISLI 261


>DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated
           kinase PAK-2 protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 280 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 101
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R     V
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135

Query: 100 S 98
           S
Sbjct: 136 S 136


>Z36752-6|CAA85327.1|  456|Caenorhabditis elegans Hypothetical
           protein F35H8.5 protein.
          Length = 456

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 580 PPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGY 687
           PP TN   + +     +  +S++V A L PS+T GY
Sbjct: 339 PPATNGQVAGLAAHAQLSALSASVAATLPPSDTAGY 374


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 553 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTT 681
           TTE  S + PP  ++T + +T+      V ST IAP+T  +TT
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433


>U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform c protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -1

Query: 235 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 83
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform b protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -1

Query: 235 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 83
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -1

Query: 235 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 83
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -1

Query: 235 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 83
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 275 DNLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQYVISSWCKCGVRSQRTHGEDEG 111
           DN + +  Q FR+ G S +     +  +       ISSW +C  +     GEDEG
Sbjct: 795 DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTYKCISSWWRCDGQDDCGDGEDEG 849


>Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical
           protein F19H8.5 protein.
          Length = 514

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 637 VSSTVIAPLTPSNTTGYLEPSMY 705
           + S  IAPL PSN+ G L PS++
Sbjct: 159 ILSPRIAPLMPSNSKGLLSPSIF 181


>Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical
           protein K11H3.3 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 267 EVIKEAVKRLIENGKRNTMDFAYQLWTKDG 356
           +V+K  ++ L     +NT+D A Q+W K+G
Sbjct: 242 DVVKTRMQGLEAKKYKNTLDCAMQIWKKEG 271


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 183 EQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 362
           E+ Y   ++GE E  + KC   +K++ G      ++++IE  +   + F    +TK+  +
Sbjct: 440 EEKYQHEILGEMEGQVLKC---VKDQNG---NHVIQKVIERVEPERLQFIIDAFTKNNSD 493

Query: 363 IV--KSYFPIQFRVI 401
            V   S  P   RVI
Sbjct: 494 NVYTLSVHPYGCRVI 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,862
Number of Sequences: 27780
Number of extensions: 405993
Number of successful extensions: 1536
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)