Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F17
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   130   3e-31
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   129   6e-31
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   6.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   8.5  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  130 bits (314), Expect = 3e-31
 Identities = 60/118 (50%), Positives = 78/118 (66%)
 Frame = -1

Query: 538 NCRCSLKKKRXKFKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTV 359
           N   +  K+  K   P+ +D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  +
Sbjct: 16  NAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRL 75

Query: 358 TKXFGGXKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIXTTQGRRDLDR 185
            K +GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR  + QG+RDLDR
Sbjct: 76  CKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDR 133


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  129 bits (311), Expect = 6e-31
 Identities = 59/111 (53%), Positives = 76/111 (68%)
 Frame = -1

Query: 517 KKRXKFKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKXFGGX 338
           K+  K   P+ +D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  + K +GG 
Sbjct: 23  KRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGS 82

Query: 337 KRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIXTTQGRRDLDR 185
              G+ PSH    SGS+ RK +QSLE + ++EK  +GGR  + QG+RDLDR
Sbjct: 83  VNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDR 133


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 630 PGPAGFFPVANTRXRXVSVTVKDVEQDKIVKTVAAHLKKNGQSSRYLST 484
           P P+ F PV        +V+ K     ++V+  A+ L K+G SS+ LST
Sbjct: 31  PPPSNFVPVYPEPTYSDTVSKKGTIV-RVVRHTASKLTKHGDSSQSLST 78


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 782  KWFPN-KGNWLPKFSPNKAFFFPAILV 705
            +W  N KG W+ K   N   FFPA LV
Sbjct: 1994 EWTKNSKGRWIMKEIRNSEEFFPADLV 2020


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,910
Number of Sequences: 5004
Number of extensions: 50596
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)