Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F16
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.88 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   3.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.7  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   6.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
 Frame = -2

Query: 881 PPRGPXNXXXGGGVXG-GKXWXXXGXKXGXPXKSQRXPXXFPXXKXXFXXXIXSWGVGPN 705
           PP GP      GG  G G      G   G P   +  P  F      F   +  +G GP 
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259

Query: 704 XXXGFXXXXGXP 669
              G     G P
Sbjct: 260 GFGGGPGGHGGP 271


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 132 AHIKQINKYFDIFPFANVTYAFDRAV 55
           AH++ +N YF    FA+V   F+R++
Sbjct: 77  AHVEHLNPYFHAEAFASVNDCFERSL 102


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 517  FAYNVLKTKTYKQFARLQLISQTLFSRVYFD--NKLEAGSSIALQFDVDEVKAQSSSGD 347
            F +N      YK   R+      + + + FD  N+L++G+  A+ +D+  +++  S  D
Sbjct: 1912 FVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHSD 1970


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 553 FTLFKSLIKISKFAYNVLKTKTYKQFARLQLISQTLFSRV 434
           F L ++L++ +K+  + +  K Y    RL ++  TL+ R+
Sbjct: 11  FVLNRNLLEANKYKLSEITFKVYISIRRLLIVVITLYRRI 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,533
Number of Sequences: 5004
Number of extensions: 46029
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)