Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F15
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    28   9.9  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    28   9.9  

>U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical
           protein C06A6.5 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = -1

Query: 250 SRTLRPTFSIFLKSFHLGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFK----IP 83
           SR L+P F    + FH  +  A +A  A  +++ +  I  K+ + K+ +   F     I 
Sbjct: 57  SRRLKPIFEESARVFHQENPQA-SAVWAIVDSQRQADIGDKYFVNKYPTMKVFVNGELIT 115

Query: 82  IQYRSTRTLRMIQNLKEFPI 23
            +YRSTR++  + N  +F +
Sbjct: 116 KEYRSTRSVEALTNFVKFQL 135


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = +2

Query: 35  LKILDHS*RSRRTILYWNFEFSGT-IEFR*NEFRTYFELRLRVGAGSRRGQRCS*AQVET 211
           +K L  +    R +   +F++ G  I    N    YF +R R+  G++RG+R S +  + 
Sbjct: 607 MKELQEAFAGHRKLSKGHFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD 666

Query: 212 LQEN*ESGTQRSRWINQSGSSYSRHRASEILRKIDFM 322
             E  + G +++   N+  +  +  +A +  +  + +
Sbjct: 667 -DEPEDDGEEKNEEKNEEEARKAAEKAEKAQKMTEML 702


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = +2

Query: 35  LKILDHS*RSRRTILYWNFEFSGT-IEFR*NEFRTYFELRLRVGAGSRRGQRCS*AQVET 211
           +K L  +    R +   +F++ G  I    N    YF +R R+  G++RG+R S +  + 
Sbjct: 605 MKELQEAFAGHRKLSKGHFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD 664

Query: 212 LQEN*ESGTQRSRWINQSGSSYSRHRASEILRKIDFM 322
             E  + G +++   N+  +  +  +A +  +  + +
Sbjct: 665 -DEPEDDGEEKNEEKNEEEARKAAEKAEKAQKMTEML 700


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,442
Number of Sequences: 27780
Number of extensions: 265939
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)