Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F12
         (983 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 46  EEKKLGTPDVDTPATVVQT 102
           +E K G+ D  TPATV  T
Sbjct: 204 DESKAGSTDASTPATVTTT 222


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 778 PPPSXTXLPXTPPXXSLSXXXXLXXXPSPSPXHPT 882
           PP +   +P  P   ++S    L   P   P  PT
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPT 444



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 13/62 (20%), Positives = 19/62 (30%)
 Frame = +3

Query: 600 PVXSXXSXXPXXXSFLPXPPXXXXPPRPPLXXXXXVLSPPPPPXXXXSPXCXXPXSLPXP 779
           P+ +  S  P   +  P P     P  P           PPP     +P    P  +   
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMIS 66

Query: 780 PS 785
           P+
Sbjct: 67  PA 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,992
Number of Sequences: 438
Number of extensions: 3542
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)