Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F11
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...   127   2e-30
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    27   2.8  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   3.7  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   4.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   4.8  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   8.5  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.5  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   8.5  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score =  127 bits (307), Expect = 2e-30
 Identities = 65/130 (50%), Positives = 80/130 (61%)
 Frame = +2

Query: 281 RLSGIICTIGPASRNVAVLXKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKL 460
           R + IICTIGP S NV  L K+ + GMN+ RMNFSHGS+EYH   I N R+A  +     
Sbjct: 26  RRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEYHQSVIDNARKASAT----- 80

Query: 461 GSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGXADTIYVDYK 640
              F LAIALDTKGPEIRTGL  GG   +  +  G  +  TT   Y EK     +Y+DYK
Sbjct: 81  NPLFPLAIALDTKGPEIRTGLTVGG--TDYPISSGHEMIFTTDDAYAEKCNDKVMYIDYK 138

Query: 641 NITNVVKPXK 670
           NIT V++P +
Sbjct: 139 NITKVIQPGR 148


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 764 APDPGKRRXPAPAYPVDLPPXLPKK 838
           APD  K+R P      +LPP LP++
Sbjct: 2   APDISKKRLPCKVLVFNLPPTLPEQ 26


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 191 GAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIG 310
           G + + ++      L+ +   D+D+K +YI+LS    T+G
Sbjct: 15  GTLNESSIYKTYQILESLNPKDVDTKENYIKLSNTFSTLG 54


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 567 SPFFSSTSAEPPPSKSPVLISGPLVSNAMAKEKGEPSL 454
           SP   ST+A  P  K+P   +  L+S   +KEK  PS+
Sbjct: 305 SPLHQSTTANHP-EKTPSRAAASLLSILDSKEKNTPSI 341


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 75   DCIQSDLNCVNYILLCVIINLRNIKQNESYCETLQ 179
            + I S  +  NY+L+C+ + L   K   +YCE+ Q
Sbjct: 1214 EIISSSNSFKNYLLVCLRMLLEVAKNVNTYCESRQ 1248


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = +2

Query: 305  IGPASRNVAVLXKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAI 484
            I P ++ +     ++++   V R+N +H S    ++   +      SY  +LG   S  I
Sbjct: 1194 ISPEAKTLLFQSIVIKSFSKVGRLNINHVSEPIDSDEFADYLSKSISYHLRLGKSKSKKI 1253

Query: 485  ALDTK 499
             ++ K
Sbjct: 1254 GIEIK 1258


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
 Frame = -1

Query: 537 PP--PSKSPVLISGPLVSNAMAKEKGEPSLAL*LFSASRQLRMVSAWYSWEPCEKFILAT 364
           PP  PS+ P + + P     +     EPS+   L      LR  +   + +P  K  L T
Sbjct: 430 PPKHPSRQPTVRATPSTGKQIEPPNDEPSIGNELLPLFESLRFENRKTTSKPKAKKTLVT 489

Query: 363 FIPVSIIFXSTATLRDAGPIVQI--IPER 283
            IP      S   + D    + +  IPE+
Sbjct: 490 SIPTKPHQASVEKVYDLNSKINLKNIPEQ 518


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 567 SPFFSSTSAEPPPSKSP 517
           SP FSS+S  PPP   P
Sbjct: 231 SPIFSSSSTPPPPPPRP 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,949
Number of Sequences: 5004
Number of extensions: 58266
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)