Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F11
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-12|CAJ30227.1|  558|Caenorhabditis elegans Hypothetical p...   166   2e-41
Z81068-4|CAE54896.1|  531|Caenorhabditis elegans Hypothetical pr...   166   2e-41
Z81068-3|CAB02983.1|  600|Caenorhabditis elegans Hypothetical pr...   166   2e-41
Z81068-2|CAB02984.1|  562|Caenorhabditis elegans Hypothetical pr...   166   2e-41
Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical pr...   142   2e-34
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    30   2.0  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    30   2.0  
U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p...    28   8.0  

>Z81068-12|CAJ30227.1|  558|Caenorhabditis elegans Hypothetical
           protein F25H5.3d protein.
          Length = 558

 Score =  166 bits (403), Expect = 2e-41
 Identities = 80/144 (55%), Positives = 102/144 (70%)
 Frame = +2

Query: 227 SQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLXKMMETGMNVARMNFSHGSHEYH 406
           + ++H+C LDI      +R +GIICTIGPA  +V +L K++  GMN+AR+NFSHGSHEYH
Sbjct: 56  THMEHLCRLDIREAPHLVRQTGIICTIGPACASVEMLQKLILNGMNIARLNFSHGSHEYH 115

Query: 407 AETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTT 586
           A TI N REA  S+S K      + IALDTKGPEIRTGLL GG SAE+EL +G +I+LTT
Sbjct: 116 AGTIANVREAADSFSDKR----VIGIALDTKGPEIRTGLLAGGASAEIELARGASIRLTT 171

Query: 587 SSDYQEKGXADTIYVDYKNITNVV 658
              + E G A  ++VDYKNI  V+
Sbjct: 172 DPHFSESGTAVNLFVDYKNIAKVL 195


>Z81068-4|CAE54896.1|  531|Caenorhabditis elegans Hypothetical
           protein F25H5.3c protein.
          Length = 531

 Score =  166 bits (403), Expect = 2e-41
 Identities = 80/144 (55%), Positives = 102/144 (70%)
 Frame = +2

Query: 227 SQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLXKMMETGMNVARMNFSHGSHEYH 406
           + ++H+C LDI      +R +GIICTIGPA  +V +L K++  GMN+AR+NFSHGSHEYH
Sbjct: 29  THMEHLCRLDIREAPHLVRQTGIICTIGPACASVEMLQKLILNGMNIARLNFSHGSHEYH 88

Query: 407 AETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTT 586
           A TI N REA  S+S K      + IALDTKGPEIRTGLL GG SAE+EL +G +I+LTT
Sbjct: 89  AGTIANVREAADSFSDKR----VIGIALDTKGPEIRTGLLAGGASAEIELARGASIRLTT 144

Query: 587 SSDYQEKGXADTIYVDYKNITNVV 658
              + E G A  ++VDYKNI  V+
Sbjct: 145 DPHFSESGTAVNLFVDYKNIAKVL 168


>Z81068-3|CAB02983.1|  600|Caenorhabditis elegans Hypothetical
           protein F25H5.3b protein.
          Length = 600

 Score =  166 bits (403), Expect = 2e-41
 Identities = 80/144 (55%), Positives = 102/144 (70%)
 Frame = +2

Query: 227 SQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLXKMMETGMNVARMNFSHGSHEYH 406
           + ++H+C LDI      +R +GIICTIGPA  +V +L K++  GMN+AR+NFSHGSHEYH
Sbjct: 98  THMEHLCRLDIREAPHLVRQTGIICTIGPACASVEMLQKLILNGMNIARLNFSHGSHEYH 157

Query: 407 AETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTT 586
           A TI N REA  S+S K      + IALDTKGPEIRTGLL GG SAE+EL +G +I+LTT
Sbjct: 158 AGTIANVREAADSFSDKR----VIGIALDTKGPEIRTGLLAGGASAEIELARGASIRLTT 213

Query: 587 SSDYQEKGXADTIYVDYKNITNVV 658
              + E G A  ++VDYKNI  V+
Sbjct: 214 DPHFSESGTAVNLFVDYKNIAKVL 237


>Z81068-2|CAB02984.1|  562|Caenorhabditis elegans Hypothetical
           protein F25H5.3a protein.
          Length = 562

 Score =  166 bits (403), Expect = 2e-41
 Identities = 80/144 (55%), Positives = 102/144 (70%)
 Frame = +2

Query: 227 SQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLXKMMETGMNVARMNFSHGSHEYH 406
           + ++H+C LDI      +R +GIICTIGPA  +V +L K++  GMN+AR+NFSHGSHEYH
Sbjct: 60  THMEHLCRLDIREAPHLVRQTGIICTIGPACASVEMLQKLILNGMNIARLNFSHGSHEYH 119

Query: 407 AETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTT 586
           A TI N REA  S+S K      + IALDTKGPEIRTGLL GG SAE+EL +G +I+LTT
Sbjct: 120 AGTIANVREAADSFSDKR----VIGIALDTKGPEIRTGLLAGGASAEIELARGASIRLTT 175

Query: 587 SSDYQEKGXADTIYVDYKNITNVV 658
              + E G A  ++VDYKNI  V+
Sbjct: 176 DPHFSESGTAVNLFVDYKNIAKVL 199


>Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical
           protein ZK593.1 protein.
          Length = 515

 Score =  142 bits (345), Expect = 2e-34
 Identities = 67/146 (45%), Positives = 97/146 (66%)
 Frame = +2

Query: 227 SQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLXKMMETGMNVARMNFSHGSHEYH 406
           + + H+CGL I  +    R +G+ICTIGPA  +V  L KM+ TGMN+AR+NFSHG+HE H
Sbjct: 16  TNISHLCGLRISERPQKTRKTGVICTIGPACSDVETLRKMINTGMNIARLNFSHGTHEAH 75

Query: 407 AETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTT 586
           A TI+  REA ++      +PF +AIALDTKGPEIRTG+       EV+L+ G++++++T
Sbjct: 76  AATIKTIREAAEN------APFPVAIALDTKGPEIRTGMF-ANNMKEVQLENGKSVRVST 128

Query: 587 SSDYQEKGXADTIYVDYKNITNVVKP 664
               +    +  IY DY+N+  VV+P
Sbjct: 129 DPSMEFAATSSHIYADYRNLPKVVQP 154


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
           protein 2, isoform b protein.
          Length = 2027

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 498 LVSNAMAKEKGEPSLAL*LFSASRQLRM-VSAWYSWEPCEKFILATFI 358
           L SNA  KEKG  SL +  F+    +R    A   W P E FIL T I
Sbjct: 74  LSSNAPVKEKGPSSLFI--FAEDNIIRRNAKAIIEWGPFEYFILLTII 119


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
           activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 498 LVSNAMAKEKGEPSLAL*LFSASRQLRM-VSAWYSWEPCEKFILATFI 358
           L SNA  KEKG  SL +  F+    +R    A   W P E FIL T I
Sbjct: 74  LSSNAPVKEKGPSSLFI--FAEDNIIRRNAKAIIEWGPFEYFILLTII 119


>U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical
           protein C33G8.10 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -3

Query: 316 CRSNSTDYSRETNVRRLGVNVEAAHMLELGADVGDCRLFNC--TRFVSCKV 170
           CR+ +  + R  + R+L ++    H L        CR+  C  T  V CKV
Sbjct: 20  CRACAAFFRRYVHSRKLDISCTCKHRLATSHPCRHCRMLKCMATGMVKCKV 70


>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
            protein T08A9.1 protein.
          Length = 1330

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 331  SYITGCRSNSTDYSRETNVRRLGVNVEAA 245
            +Y+  C S +  + +E+++RRLG+N + A
Sbjct: 1246 AYVIFCSSPNRYFVKESSIRRLGINTQNA 1274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,019,934
Number of Sequences: 27780
Number of extensions: 348575
Number of successful extensions: 1055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)