Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F10
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   4.5  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   7.8  

>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 388  FSSYIFIKLCYYVLSKIDKFRFWYHVKMTDKKRAREKTYRHFLSGVDPTITY 543
            F  +  I   YY+LS+   F  W H K   K+R   +    F+  +  T T+
Sbjct: 952  FGIFCLIAGVYYILSESSSFDRWMHGK--HKERGTTRKLEDFVMQLQRTSTH 1001


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 751 FSHYQLRTIGTTVKTIVTFLSVFYGDTYL 665
           FSHY +   G+ ++ +  F   +YG  YL
Sbjct: 348 FSHYVMNLPGSAIEFLDAFKGCYYGLEYL 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,957
Number of Sequences: 5004
Number of extensions: 70822
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)