Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F09
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.042
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   2.8  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   4.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 30/76 (39%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -3

Query: 908 GGPNPGXGXTXRGGGKGXGXPXFXXGGKGDXGFRVNGXGXEQGGXXXGVFXGGNXRGXFX 729
           GGP PG G    GG  G G      GG G  G    G G  +GG   G F GG   G F 
Sbjct: 198 GGPPPGPGGF--GGFGGFGGEGHHHGGHGGFG---GGPGGFEGG--PGGFGGG--PGGFG 248

Query: 728 XPRG--GXAPPXXGGG 687
              G  G  P   GGG
Sbjct: 249 GGLGGFGGGPGGFGGG 264


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/54 (35%), Positives = 21/54 (38%)
 Frame = -3

Query: 875 RGGGKGXGXPXFXXGGKGDXGFRVNGXGXEQGGXXXGVFXGGNXRGXFXXPRGG 714
           RGG +G G   F  G  G  G R    G  +GG   G    G  RG      GG
Sbjct: 11  RGGSRG-GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -3

Query: 833 GGKGDXGFRVNGXGXEQGGXXX---GVFXGGNXRGXFXXPRGGXAPPXXGG 690
           GG+G  GFR  G G  +GG      G F GG+  G     RGG      GG
Sbjct: 138 GGRG--GFR-GGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,915
Number of Sequences: 5004
Number of extensions: 17469
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)