Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F08
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    31   1.2  
06_01_0198 + 1529190-1530371                                           29   3.5  
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666...    29   4.7  
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851...    28   8.1  
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    28   8.1  

>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
 Frame = +2

Query: 317 HMRLAGFKDLGYSFV---AGGNGKIYEGAGWNHIGAHTLHYNNISIGIGFIG--DFREKL 481
           H R +   + GYSFV    GG G+I+ G  W         Y ++S  I   G  D+ +  
Sbjct: 377 HARESVDDNTGYSFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPS 436

Query: 482 PTQQA--LQAVHDFLACGVXKNLLTEDYHVVGHQQLINTLSPGAVLXSEIESWPH 640
             Q A  L +V   + C   + +   +Y   G    ++   P A   S+++  P+
Sbjct: 437 RDQYASSLYSV-SIVTCMTKRTVFYGEYRCTGDGANLSDRVPYAQKLSDVQVLPY 490


>06_01_0198 + 1529190-1530371
          Length = 393

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 1   HXSXLPTSLYGNSLRFDLHSTNLKQVAKMLVAPVSIIFGVLGEFR 135
           H S  P + YG +  F LH+ +L  VA  LVAP  ++  +L  +R
Sbjct: 293 HVSRSPDTEYGRAKVF-LHNHHLCAVATQLVAPPLLVLSLLALWR 336


>10_08_0371 + 17265691-17265788,17265873-17265971,17266586-17266628,
            17267250-17267321,17267400-17267495,17267609-17267842,
            17267914-17268097,17268247-17268358,17268447-17268533,
            17268703-17268841,17269628-17269718,17270045-17270154,
            17270309-17270413,17270982-17271055,17271379-17271454,
            17271786-17272022,17272419-17272490,17273082-17273153,
            17273240-17273304,17273306-17273383,17273384-17273486,
            17273769-17273858,17274873-17274980,17275063-17275113,
            17276126-17276203,17276284-17276346,17276944-17277140,
            17277243-17277312,17277640-17277828
          Length = 1030

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 254  VSNDCFTDEECLLSVNSLRQHHM--RLAGFKDLGYSFV--AGGNGKIYE 388
            ++ DC   + CL ++N+L  +H   RL G   L    +   G NGK+ E
Sbjct: 877  LNKDCDIVDRCLTAINALASYHFKERLGGRGGLSSQLMESEGSNGKLQE 925


>12_02_0992 +
           25083397-25083537,25084198-25084228,25084971-25085139,
           25085228-25085291,25085408-25085474,25086543-25086586,
           25086835-25086922,25087079-25087238,25087659-25087779,
           25087859-25087942,25088043-25088162,25088689-25088901,
           25088995-25089054,25089144-25089262,25089407-25089465,
           25089585-25089919
          Length = 624

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 58  STNLKQVAKMLVAPVSIIFGVL--GEFRNPECSVPMRRNSHHRM 183
           S N+K V   L+  V +  GVL  GE +N  C  P+ R S  R+
Sbjct: 39  SANIKHVGNDLLIGVGVHRGVLGWGEIKNRSCPWPVVRLSRARL 82


>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
            21824135-21824224,21825033-21825603,21826097-21826734,
            21826978-21827098,21827223-21827337,21828234-21829723,
            21829830-21829901,21830151-21830196,21830413-21830515,
            21830591-21830674,21831035-21831475,21831651-21831746,
            21831896-21832045,21832131-21832274,21832414-21832527,
            21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 75   GCKDVGCTRLYYFWCS 122
            GC+DV C+ L++ WC+
Sbjct: 1490 GCRDVNCSVLFHPWCA 1505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,559,343
Number of Sequences: 37544
Number of extensions: 464125
Number of successful extensions: 1049
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)