Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F06
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.06 |mrps16||mitochondrial ribosomal protein subunit S16|...    50   3e-07
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   6.5  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.5  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.5  

>SPBC354.06 |mrps16||mitochondrial ribosomal protein subunit
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 96

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
 Frame = +2

Query: 203 NRPFFHISVTHRRRLNSQPVIEQLGSYDPMP-------NINNEKLVALNLERLKYWLGKG 361
           NRPF+HI V +  +      IE +G++DP+P       +I   K + LN+ER KYW+  G
Sbjct: 14  NRPFYHIVVANAWKAPQAKPIETIGTFDPIPKKIDSQDSIPRIKDIQLNVERFKYWISVG 73

Query: 362 AHVSTPVSEL 391
           A  S  V  L
Sbjct: 74  AQPSDTVRSL 83


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 191 WRIRRIDFAALAKYLPVPLAGGRDIF*ILY*NKLNW 84
           WR++RI+FA    +  V L G R++F  L   K  W
Sbjct: 616 WRLKRIEFALAHSWRRVNL-GERNVFRNLDYTKFEW 650


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 299 INNEKLVALNLERLKYWLGKGAHV 370
           IN+E++  +NL+ L  WL +  HV
Sbjct: 614 INHEEIDNMNLKSLHRWLSRSLHV 637


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 242 RLNSQPVIEQLGSYDPMPNINNEKLVALNLERLKYWLGKG 361
           R   Q V++QLG  DP    +++  +ALN +   ++ G G
Sbjct: 194 RYYPQAVVKQLGLSDPPSYADSDITIALNAD-ANFYFGSG 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,465
Number of Sequences: 5004
Number of extensions: 52464
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)