Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F04
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    35   0.018
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.67 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.3  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +1

Query: 733  PXAXPPGRPXTXLXXK-XXXHPAPPPXXRPXTPXTTPXXXXPPPXPPHP 876
            P + PP RP +    +     P PPP   P  P   P    PP  PP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +1

Query: 796 APPPXXRPXT---PXTT-PXXXXPPPXPPHPP 879
           +PPP  +P +   P T+ P    PPP PP PP
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 800 PPPTXXXXPPXQPPXXXXPPPXP 868
           PPP     PP QPP    PPP P
Sbjct: 12  PPPPPGFEPPSQPP----PPPPP 30



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 824 PPXQPPXXXXPPPXPPTP 877
           PP  PP    PP  PP P
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
 Frame = +1

Query: 733 PXAXPPGRPXTXLXXKXXXHPAPPPXX-RPXTPXTTPXXXXPPPXPPHPP 879
           P + PP  P +         P PP     P  P   P     PP  P PP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/49 (28%), Positives = 15/49 (30%)
 Frame = +1

Query: 733 PXAXPPGRPXTXLXXKXXXHPAPPPXXRPXTPXTTPXXXXPPPXPPHPP 879
           P + P G P             P P   P  P   P    PPP P   P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 744 PPGPPXHXPXXQXAXXPGXPPXXTXXNPPXNPP 842
           PP P    P    A  P  PP      PP  PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 800 PPPTXXXXPPXQPPXXXXPPPXPP 871
           P P     PP  P     PPP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
 Frame = +1

Query: 793 PAPPPXX---RPXTPXTTPXXXX--PPPXPPHPP 879
           P PPP      P  P   P      PPP PP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
 Frame = +1

Query: 733  PXAXPPGRPXTXLXXKXXXHPAPPPXXRPXTPXTTPXXXXPP-PXP 867
            P   PP              P PPP   P  P  TP    PP P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP--TPSAGLPPVPVP 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,003
Number of Sequences: 5004
Number of extensions: 17015
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)