Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_F03
         (1012 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.0  
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    29   7.0  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 655 PPPPPXXGGFFXXXPXXPP 711
           PPPPP  GGF    P  PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 655 PPPPPXXGGFFXXXPXXPP 711
           PPPPP  GGF    P  PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 655 PPPPPXXGGFFXXXPXXPP 711
           PPPPP  GGF    P  PP
Sbjct: 354 PPPPPPPGGFKGGPPPPPP 372


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 655 PPPPPXXGGFFXXXPXXPP 711
           PPPPP  GG +   P  PP
Sbjct: 41  PPPPPPCGGGYEAPPPPPP 59



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 655 PPPPPXXGGFFXXXPXXPP 711
           PPPPP  GG+    P  PP
Sbjct: 42  PPPPPCGGGYEAPPPPPPP 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,127,554
Number of Sequences: 27780
Number of extensions: 245464
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2657408452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)