Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_F02
(1337 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 35 0.11
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 33 0.35
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 1.1
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 2.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 4.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 4.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 4.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 7.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 7.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 7.4
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 35.1 bits (77), Expect = 0.11
Identities = 21/78 (26%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Frame = -1
Query: 350 PXPLXSSXXXXPXPPPXGARRRXXXRRXPPAXP--FXXXPPPRXXTXXSTPFXPKXPXXA 177
P P P PPP + R PP P PPPR P P P
Sbjct: 111 PAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRR 170
Query: 176 XXXQPXXXSPDXPATXLP 123
P P P P
Sbjct: 171 PPRTPPSPEPRNPPRTPP 188
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 33.5 bits (73), Expect = 0.35
Identities = 26/103 (25%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Frame = -1
Query: 335 SSXXXXPXPPPXGARRRXXXRRXPPAXPFXXXPPPRXXTXXSTPFXPKXPXXAXXXQPXX 156
SS P PPP G+ R A P PP +T P A QP
Sbjct: 287 SSGTSAPQPPPRGSTAAPGTR----APPATRAPPATRAPPATTRAPPATTRPAPASQPPV 342
Query: 155 XSPDXPATXLPXXXLXXPXXXXAVSETXMXPXPXF-XPAXPXP 30
P+ P + P P + P P + P+ P P
Sbjct: 343 REPETPDSGYPSPAPQEPAHPSPSYPSPSYPSPSYPSPSYPSP 385
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.9 bits (69), Expect = 1.1
Identities = 25/97 (25%), Positives = 27/97 (27%)
Frame = +1
Query: 97 SXGXXRXXXGRXVAGWSGEXXXGXXXXAXXGXFGXNGVEXSVXXRGGGXXXXGXAGGXRR 276
S G R G GW G +G NG + GGG G GG
Sbjct: 40 SGGWGRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGG 99
Query: 277 XXXRRRAPXGGGXGXXXXEEXXGXGXXXXGXXGXXGG 387
R GG G G G G G G
Sbjct: 100 GGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGRGRG 136
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.7 bits (66), Expect = 2.4
Identities = 28/104 (26%), Positives = 31/104 (29%), Gaps = 2/104 (1%)
Frame = -1
Query: 443 AXXXFGRRGXAGXXXRXHXPPXXPXXPXXXXPXPLXSSXXXXPXPPPXGAR--RRXXXRR 270
A FGR G G P P P P P+ P PPP A+
Sbjct: 18 AQYPFGRGGCGGCPT----PMCQPRMPCAA-PMPMPMPMPVCPPPPPCPAQFCPPPPICP 72
Query: 269 XPPAXPFXXXPPPRXXTXXSTPFXPKXPXXAXXXQPXXXSPDXP 138
PP P PPP S P + P P P P
Sbjct: 73 PPPPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYVPQYYQPMMP 116
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = -1
Query: 386 PPXXPXXPXXXXPXPLXSSXXXXPXPPPXGARRRXXXRRXPPAXPFXXXPPP 231
PP P P P SS P PPP R PP P PPP
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR-----TPGPPGMPGMPPPPP 321
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = -1
Query: 386 PPXXPXXPXXXXPXPLXSSXXXXPXPPPXGARRRXXXRRXPPAXPFXXXPPP 231
PP P P P SS P PPP R PP P PPP
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR-----TPGPPGMPGMPPPPP 331
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 4.3
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Frame = -1
Query: 317 PXPPPXGARRRXXXRRXPPAXPFXXXPPPRXXTXXSTP--FXPKXPXXAXXXQPXXXSPD 144
P PPP G+ PP PPPR + P P P P SP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
Query: 143 XP 138
P
Sbjct: 299 PP 300
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 4.3
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Frame = -1
Query: 317 PXPPPXGARRRXXXRRXPPAXPFXXXPPPRXXTXXSTP--FXPKXPXXAXXXQPXXXSPD 144
P PPP G+ PP PPPR + P P P P SP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
Query: 143 XP 138
P
Sbjct: 320 PP 321
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 4.3
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Frame = -1
Query: 317 PXPPPXGARRRXXXRRXPPAXPFXXXPPPRXXTXXSTP--FXPKXPXXAXXXQPXXXSPD 144
P PPP G+ PP PPPR + P P P P SP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
Query: 143 XP 138
P
Sbjct: 305 PP 306
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -1
Query: 386 PPXXPXXPXXXXPXPLXSSXXXXPXPPPXGARRRXXXRRXPPAXPFXXXPPP 231
PP P P L P PPP G PP P PPP
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -1
Query: 386 PPXXPXXPXXXXPXPLXSSXXXXPXPPPXGARRRXXXRRXPPAXPFXXXPPP 231
PP P P L P PPP G PP P PPP
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -1
Query: 386 PPXXPXXPXXXXPXPLXSSXXXXPXPPPXGARRRXXXRRXPPAXPFXXXPPP 231
PP P P L P PPP G PP P PPP
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,804,218
Number of Sequences: 27780
Number of extensions: 79310
Number of successful extensions: 360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3756810758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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