Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_E23
         (1064 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.052
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.12 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.16 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.34 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   1.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   5.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.052
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 552 PPPPXXGGGXPPPPPP 599
           PPPP   G  PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPP 780



 Score = 32.3 bits (70), Expect = 0.12
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 552 PPPPXXGGGXPPPPPP 599
           PPP   G G PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPP 781



 Score = 31.9 bits (69), Expect = 0.16
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 552 PPPPXXGGGXPPPPPP 599
           PP P  GG  PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPP 768



 Score = 31.5 bits (68), Expect = 0.21
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +3

Query: 879 PXPGXGXXXXXXPPPPPPP--XXXXPPXPXPXP 971
           P P         PPPPPPP      PP P P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.5 bits (68), Expect = 0.21
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 552 PPPPXXGGGXPPPPPP 599
           PPP    GG PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767



 Score = 29.9 bits (64), Expect = 0.64
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 877 PPXPGXGXXXXXXXPPPPPXXXXXPPXPPPXP 972
           PP P  G       PPPP      PP PPP P
Sbjct: 753 PPAPIMGGPPPP--PPPPGVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 915 PPPPPPPXXXXPPXPXPXP 971
           PPPPPP      P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIP 750



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 552 PPPPXXGGGXPPPPPP 599
           PPPP    G  PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +3

Query: 921  PPPPPXXXXPPXPXPXPKKKXPXXXXXXXKKKKXPP 1028
            PPPPP     P P P P    P            PP
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
 Frame = +3

Query: 918 PPPPPPXXXXP---PXPXPXP 971
           PPPPPP    P   P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP 752


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +3

Query: 915  PPPPPPPXXXXPPXPXPXPKKKXPXXXXXXXKKKKXP 1025
            PPPPPPP    PP   P P    P       +K K P
Sbjct: 9    PPPPPPPPGFEPPSQPPPP----PPPGYVKKRKNKTP 41



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 879 PXPGXGXXXXXXPPPPPPP 935
           P P  G      PPPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = +3

Query: 552 PPPPXXG---GGXPPPPPP 599
           PPPP  G      PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +3

Query: 552 PPPPXXGGGXPP--PPPP 599
           PPPP   G  PP  PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +3

Query: 552  PPPPXXGGGXPPPPPPXXXXXXXXXXXXXXXXPPXXXXPPXP 677
            PP P    G PP PPP                PP    PP P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect(2) = 0.34
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 879 PXPGXGXXXXXXPPPPPPP 935
           P  G G      PPPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343



 Score = 22.2 bits (45), Expect(2) = 0.34
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 918 PPPPPPXXXXPPXPXPXP 971
           PPPPPP         P P
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 919  PPPPPXXXXXPPXPPPXP 972
            PPPPP     PP  PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP 1724



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 918  PPPPPPXXXXPPXPXPXPKKKXP 986
            P PPPP    PP P   P    P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGP 1727



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
 Frame = +3

Query: 915  PPPPP---PPXXXXPPXPXPXPKKKXP 986
            PPPPP   PP    PP P   P    P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 914  PXPPPPPXXXXXPXXXPPXQKKXP 985
            P PPPPP     P   PP     P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect(2) = 1.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 879 PXPGXGXXXXXXPPPPPPP 935
           P  G        PPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313



 Score = 21.8 bits (44), Expect(2) = 1.3
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 915 PPPPPPPXXXXPPXPXPXP 971
           PPPPPP          P P
Sbjct: 309 PPPPPPSNDFWKDSNEPAP 327


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 595 GGGGGXPPPXXGGGG 551
           GGG G PPP  GG G
Sbjct: 194 GGGSGGPPPGPGGFG 208



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 676 GXGGKXXXGGXFXSPPAGXXXXFXXXGGGGGGXPPPXXGGGG 551
           G GG     G F   P G        GGG GG      G GG
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 555 PPPXXGGGXPPPPPP 599
           P P   G  PPPPPP
Sbjct: 347 PTPQVQGSRPPPPPP 361


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 874 SPPXPGXGXXXXXXXPPPPPXXXXXPPXPPPXP 972
           +PP P          PPPPP      P  PP P
Sbjct: 730 APPTPAP-TPAVKHHPPPPPVRSSISPSMPPAP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,556
Number of Sequences: 5004
Number of extensions: 27887
Number of successful extensions: 364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)