Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_E22
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    33   0.040
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    33   0.070
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.6  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   8.0  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 33.5 bits (73), Expect = 0.040
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = +3

Query: 60  LLRVNLDPDMIRYIDEFGQTTTRMQ*KKCFICEICDAIALFVTIISCNKQVNKQTIAFIL 239
           L R  +   + R I E  +   R Q   C +CE CD  A +V ++      ++  +  + 
Sbjct: 40  LKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEA-YVKLVEALCAESQTPLVKVA 98

Query: 240 CFRFRGEVWEGFSAFMKSANARGEAGC 320
             +  GE W G     +  NAR   GC
Sbjct: 99  DPKILGE-WAGLCVLDRDGNARKVVGC 124


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 32.7 bits (71), Expect = 0.070
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = +3

Query: 60  LLRVNLDPDMIRYIDEFGQTTTRMQ*KKCFICEICDAIALFVTIISCNKQVNKQTIAFIL 239
           L R  +   + R I E  +   R Q   C +CE CD  A +V ++      ++  +  + 
Sbjct: 37  LKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEA-YVKLVEALCAESETPLIKVA 95

Query: 240 CFRFRGEVWEGFSAFMKSANARGEAGC 320
             +  GE W G     +  NAR   GC
Sbjct: 96  DPKVLGE-WAGLCVLDRDGNARKVVGC 121


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 211 TCLLQLIMVTNKAIASQISQIKHFFH 134
           +CL+ L   TN  I  ++   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 427 DNRITAFE*ADTRSPQPNDPSAASQ*ARKAKERPNTQPASPRALADFINAEKPSHTSPL 251
           DN  + F  A  +S +P+     S+  RK+K    + P+S  A +     EKP+ T  L
Sbjct: 146 DNVSSTFRNATRKSKKPSASKDTSRGVRKSKAGAPSDPSSVHAPSSL---EKPAGTGDL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,602
Number of Sequences: 5004
Number of extensions: 68134
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)