Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_E18
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    81   2e-16
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    28   2.0  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   3.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.1  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    26   6.1  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    26   8.1  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
 Frame = +3

Query: 210 FTWVEYLWEQYLSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDKEQFKIVKELYS 389
           F+  +Y W+ YL  RQ+  Y      P  L E ++E  ++KA  Y  DK  F  +   ++
Sbjct: 55  FSIGKYAWDLYLRRRQVP-YLLREKPPAILAEHVDEKKYQKALSYARDKSWFSTIVSTFT 113

Query: 390 TILTSVILYNKWIYVAWRKS-----EQIGAMFN-ISPDREIIISCIFMTFITLFNFIVNK 551
             +  +I+    +   W  +     +++ A  +  S    I  SC+FM  +TLF+ ++  
Sbjct: 114 LAVDLLIIKYDGLSYLWNITKFPWMDKLAASSSRFSLSTSITHSCVFMFGLTLFSRLIQI 173

Query: 552 PFTIYGVFVLEERHGFNKQTVRFFIKDQIKSLFL 653
           PF +Y  FV+EE++GFNK T++ F+ D +K L L
Sbjct: 174 PFNLYSTFVIEEKYGFNKSTLKIFVIDLLKELSL 207


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 262 RFTKLIIPSQKI*KKCSMRTCLRRHDYMELIKSSSK*SRN 381
           +F  ++ P  +  +KC  R C   HD+    K S   S N
Sbjct: 7   QFKHIVCPFLRTGRKCQSRNCFFSHDFQNSTKISPPYSEN 46


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 474 ISPDREIIISCIFMTFITLFNFIVNKPF-TIYGV 572
           ++P+   +  C+F   +T F+ +V  PF TI GV
Sbjct: 432 LTPEVSAVTLCLFWNKMTRFSLVVGAPFGTITGV 465


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = +3

Query: 267  YKTNNTIPEDLKEMLNEDLFKKARLYGIDKEQFKIVKELYSTILTSVILYNKWIYVA 437
            Y  N +IP+ L  + N   F  + +  +     ++  +LY   + S++ +    Y+A
Sbjct: 4055 YFENLSIPKPLPFLSNNGKFMSSMMSTVSLPSVRLACQLYGVSIQSLVFFTWGYYIA 4111


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 303 EMLNEDLFKKARLYGIDKEQFKIVKELYSTILTSVILYNKWIYV 434
           ++ N D+ ++      +  +F  +      + T +I +NKWIY+
Sbjct: 31  KLRNGDVLQEVTESLTEDSEFNYIVNESQNVSTRLIFWNKWIYI 74


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 582 EERHGFNKQTVRFFIKDQIKSLF-LRFSDYITNNI-CSNYI 698
           +ER+  N+Q + FF ++ +K LF L F++  + N+ C  Y+
Sbjct: 599 KERNDRNEQEIPFFFEELLKQLFTLCFANCESMNVRCLIYV 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,495,571
Number of Sequences: 5004
Number of extensions: 73358
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)