Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_E18
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 107 1e-23
03_02_0023 + 5065962-5066079,5066179-5067614 36 0.042
03_02_0024 + 5079690-5081351 34 0.17
07_03_1045 + 23528768-23528879,23528979-23530399 31 0.91
01_07_0304 - 42628086-42628104,42628828-42630263 31 1.6
12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387 30 2.1
10_07_0147 + 13404711-13404764,13404865-13405232,13406105-134061... 29 4.9
07_03_1046 - 23531218-23532638,23532781-23532868 29 4.9
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467... 29 4.9
10_06_0088 - 10538037-10539463,10539696-10539789 29 6.4
>02_05_0311 +
27782110-27782326,27784121-27784268,27784394-27784478,
27784555-27784650,27785666-27785731,27785900-27785998,
27786145-27786258,27786468-27786578,27786672-27786734,
27786816-27786908,27787960-27788073,27788440-27788505,
27788782-27788994,27789086-27789116,27789459-27791587
Length = 1214
Score = 107 bits (257), Expect = 1e-23
Identities = 57/199 (28%), Positives = 115/199 (57%), Gaps = 2/199 (1%)
Frame = +3
Query: 210 FTWVEYLWEQYLSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDKEQFKIVKELYS 389
F + Y++E YL +RQ + K T+P+ L +++ + F+++R Y +DK +F + E +
Sbjct: 74 FMILMYIFETYLDIRQHRALKLP-TLPKPLVGVISGEKFERSRAYSLDKSKFHFIHEAVT 132
Query: 390 TILTSVILYNKWIYVAWRKSEQIGAMFNISPDREIIISCIFMTFITLFNFIVNKPFTIYG 569
++ + ILY + + W+KS ++ ++ + EI+ + F+ + +++ I + PF++Y
Sbjct: 133 ILMDTTILYYRVLPWVWKKSGELATNAGLNAENEILHTLAFLAGVMIWSQITDLPFSLYS 192
Query: 570 VFVLEERHGFNKQTVRFFIKDQIKSLFLRFSDYITNNICSNYIIML--GRRHVCGVGYGY 743
FV+E +HGFNKQT+ FI+D IK + L S + I + II++ G ++ +G+
Sbjct: 193 TFVIEAKHGFNKQTIWLFIRDMIKGILL--SILLGPPIVAAIIIIVQNGGPYLAIYLWGF 250
Query: 744 LLLVAHSYWLTLYPTSHSP 800
+ ++ +T+YP +P
Sbjct: 251 MFALS-LVMMTIYPIVIAP 268
Score = 32.7 bits (71), Expect = 0.39
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +1
Query: 673 PIISVAII**CLGGDMFVVWAMAIYYWLHTPTG*HYIQPVIAPLFDKFVPLPDXIAQDSX 852
PI++ II GG ++ + L Y VIAPLF+KF PLP+ + ++
Sbjct: 227 PIVAAIIIIVQNGGPYLAIYLWGFMFALSLVMMTIY-PIVIAPLFNKFTPLPEGVLREKI 285
Query: 853 LKIXPS 870
K+ S
Sbjct: 286 EKLAAS 291
>03_02_0023 + 5065962-5066079,5066179-5067614
Length = 517
Score = 35.9 bits (79), Expect = 0.042
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 657 FSDYITNNICSNYIIMLGRRHVCGVGYGYLLLVAHSYWLTLYPTS 791
F+ + + NY ++ R V G+G GY L++A Y + PTS
Sbjct: 101 FTGALLMGLAPNYAFLMAGRFVAGIGVGYALMIAPVYTAEVAPTS 145
>03_02_0024 + 5079690-5081351
Length = 553
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 657 FSDYITNNICSNYIIMLGRRHVCGVGYGYLLLVAHSYWLTLYPTS 791
F+ + + +Y I++ R V GVG GY L++A Y + PTS
Sbjct: 135 FAGALIMGLAPSYAIVMLGRFVAGVGVGYALMIAPVYTAEVAPTS 179
>07_03_1045 + 23528768-23528879,23528979-23530399
Length = 510
Score = 31.5 bits (68), Expect = 0.91
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 690 NYIIMLGRRHVCGVGYGYLLLVAHSYWLTLYPTS 791
NY +++ R V G+G GY L++A Y + P S
Sbjct: 110 NYAMLMFGRFVAGIGVGYALMIAPVYTAEVSPAS 143
>01_07_0304 - 42628086-42628104,42628828-42630263
Length = 484
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 657 FSDYITNNICSNYIIMLGRRHVCGVGYGYLLLVAHSYWLTLYPTS 791
F I + NY +++ R V G+G GY ++A Y + P S
Sbjct: 47 FVGAIMMGLSVNYPMLMAGRFVAGIGVGYAFMIAPVYTAEVSPAS 91
>12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387
Length = 487
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 678 NICSNYIIMLGRRHVCGVGYGYLLLVAHSYWLTLYPTS 791
++ Y ++ R V G+G GY L++A Y + P S
Sbjct: 116 SLAGGYAALMAGRFVAGIGVGYALVIAPVYAAEISPAS 153
>10_07_0147 +
13404711-13404764,13404865-13405232,13406105-13406153,
13406374-13406470,13406863-13407011,13407554-13407667,
13408196-13408327,13409143-13409256,13410233-13410454
Length = 432
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 521 KCHKNATYNYLSIWRDVEHCSNLFTF 444
K K++ YNY+ WR++ SNL TF
Sbjct: 365 KAIKSSPYNYVRTWRNMHKQSNLPTF 390
>07_03_1046 - 23531218-23532638,23532781-23532868
Length = 502
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 657 FSDYITNNICSNYIIMLGRRHVCGVGYGYLLLVAHSYWLTLYPTS 791
F+ + +Y ++ R V GVG GY +++A Y + P S
Sbjct: 91 FARALLMGFSGDYATLMVGRFVAGVGVGYAIMIAPVYTAEISPAS 135
>01_05_0132 -
18446105-18446197,18446281-18446372,18446684-18446783,
18446855-18447046,18447216-18447536,18447848-18447943,
18448006-18448098,18448181-18448306,18448358-18449053,
18449130-18449162
Length = 613
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -1
Query: 511 KMQLIIISLSGEMLNIAPICSLFLHAT*IHLLYNITDVSIVLYSSLTILNCSLSI 347
K Q ++ ++ L + P F+H+ ++LL NI D+ ++SLT+ + SI
Sbjct: 160 KRQFVLYTIG---LILCPTTERFVHSDYLNLLINIADIKRTNWASLTLNHLKRSI 211
>10_06_0088 - 10538037-10539463,10539696-10539789
Length = 506
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 681 ICSNYIIMLGRRHVCGVGYGYLLLVAHSY 767
+ N+ +L R V GVG GY L++A Y
Sbjct: 101 LAPNFATLLAGRCVAGVGVGYALMIAPVY 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,935,609
Number of Sequences: 37544
Number of extensions: 398170
Number of successful extensions: 995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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