Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_E13
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.031
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.094
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.50
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.88
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.5
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 28 2.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.7
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 26 8.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.031
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = +1
Query: 730 LVPPXXPXPXPPXPNPQXXFPSXPPPVXXXRXXGTXXPPPXXXXPPPPXA 879
+VP P P P P P PPP G PPP PPPP A
Sbjct: 740 IVPTPAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPP----PPPPPA 784
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Frame = +1
Query: 730 LVPPXXPXPXPPXPNPQXXFPSXPPPVXXXRXXGTXXPPPXXX--XPPPP 873
L P P P P P PPP PPP PPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.094
Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Frame = +1
Query: 652 PPPXXNAXPPKSXLXRHNXXXXXXFSLVPPXX-PXPXPPXPNPQXXFPSXPPPVXXXRXX 828
P P ++ P L + S PP P PP P PS PPPV
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSE 1072
Query: 829 GTXXPPPXXXXPPP 870
P P P P
Sbjct: 1073 IPSIPAPSGAPPVP 1086
Score = 29.5 bits (63), Expect = 0.67
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +1
Query: 733 VPPXXPXPXPPXPNPQXXFPSXPPPVXXXRXXGTXXPPPXXXXPPPP 873
VPP P PP P P P PPP P P PP P
Sbjct: 1191 VPP--PSEAPPVPKPSVGVPPVPPP-----STAPPVPTPSAGLPPVP 1230
Score = 29.1 bits (62), Expect = 0.88
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 748 PXPXPPXPNPQXXFPSXPPPVXXXRXXGTXXPPPXXXXPPPP 873
P P P P PS PPV P P PP P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Frame = +1
Query: 727 SLVPPXXPXPX---PPXPNPQXXFPSXPPP-----VXXXRXXGTXXPPPXXXXPPP 870
S+ P P P PP P P P PPP V PPP P P
Sbjct: 1165 SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +1
Query: 748 PXPXPPXPNPQXXFPSXPPPVXXXRXXGTXXPPPXXXXPPP 870
P P P P PS PPV P P P P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Frame = +1
Query: 727 SLVPPXXPXPX--PPXPNPQXXFPSXP------PPVXXXRXXGTXXPPPXXXXPPPP 873
S+ P P P PP P P P P PPV G PP PP P
Sbjct: 1146 SVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA-GVPPVPPPSEAPPVP 1201
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.50
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +1
Query: 733 VPPXXPXPXPPXPNPQXXFPSXPPPVXXXRXXGTXXPPPXXXXPPPPXA 879
+PP P PP P P+ PPP+ GT PP PP P A
Sbjct: 232 IPPSIPSSRPPERVPSLSAPA-PPPIPPP-SNGTVSSPP--NSPPRPIA 276
Score = 27.9 bits (59), Expect = 2.0
Identities = 22/75 (29%), Positives = 24/75 (32%)
Frame = +1
Query: 649 APPPXXNAXPPKSXLXRHNXXXXXXFSLVPPXXPXPXPPXPNPQXXFPSXPPPVXXXRXX 828
APPP A P +S S P P PP P PS PP +
Sbjct: 390 APPP---AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP-PSAPPSLPMGAPA 445
Query: 829 GTXXPPPXXXXPPPP 873
PP PP P
Sbjct: 446 APPLPPSAPIAPPLP 460
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Frame = +1
Query: 736 PPXXPXPX------PPXPN--PQXXFPSXPPPVXXXRXXGTXXPPPXXXXPPPP 873
PP P P PP N P PPP PP PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.88
Identities = 22/91 (24%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Frame = +1
Query: 604 GLXAXXHDQXTXXEXAPPPXXNAXPPKSXLXRHNXXXXXXFSLVPPXXPXPXPPXPNPQX 783
G+ H + APP P+S L +PP P PP P+
Sbjct: 108 GMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPS--IPPPSPASAPPIPSKAP 165
Query: 784 XFP-SXPPPVXXXRXXGTXXPPPXXXXPPPP 873
P S PPP + P PP
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 733 VPPXXPXPXPPXPNPQXXFPSXPPP 807
+PP P P PP P + PS PPP
Sbjct: 4 LPPGNPPPPPPPPGFEP--PSQPPP 26
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 89 PLVSQRPPLNLHKLTMNFAKILSFVFALVLALRMTSAAPEPRWKIFKKIEKMGRNIRDGI 268
PL+ PP N+ + + + FAL + R+ ++ P+P+ ++ R I D +
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTA-AFALTMLSRVDASVPKPQAICLAPSRELARQIMDVV 204
Query: 269 VKAGPAIEV 295
+ G EV
Sbjct: 205 TEMGKYTEV 213
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +1
Query: 727 SLVPPXXPXPXPPXPNPQXXFPSXPPPVXXXRXXGTXXPPPXXXXPPPP 873
S PP P PP P P PP+ P P P P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 125 YVNSKADVETQAALY*SLDVHYRECQILRKF 33
Y+N + DV L S D + C++LRK+
Sbjct: 143 YLNRRYDVSVPFILMNSYDTNDETCKVLRKY 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,064
Number of Sequences: 5004
Number of extensions: 45652
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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