Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_E10
(878 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 285 2e-76
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 285 2e-76
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 285 2e-76
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 285 2e-76
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 224 3e-58
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 69 2e-11
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 285 bits (698), Expect = 2e-76
Identities = 140/211 (66%), Positives = 163/211 (77%), Gaps = 2/211 (0%)
Frame = +1
Query: 70 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 249
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 250 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 429
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 430 LGRKKGAKLTEAEEAIINKKRSQKTARKYLXKATVLLRLRVLXKSNSTRG--VCWLAWRV 603
LGRKKGAKLT EE I+NKKRS+K +KY + ++ L + +G + +A R
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKY-DERKKNAKISSLLEEQFQQGKLLACIASRP 179
Query: 604 AQVSVVAPMVTSXKAKELEFYLRKIKSKRAK 696
Q V + KELEFYLRKIK+++ K
Sbjct: 180 GQCGRADGYV--LEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 285 bits (698), Expect = 2e-76
Identities = 140/211 (66%), Positives = 163/211 (77%), Gaps = 2/211 (0%)
Frame = +1
Query: 70 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 249
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 250 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 429
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 430 LGRKKGAKLTEAEEAIINKKRSQKTARKYLXKATVLLRLRVLXKSNSTRG--VCWLAWRV 603
LGRKKGAKLT EE I+NKKRS+K +KY + ++ L + +G + +A R
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKY-DERKKNAKISSLLEEQFQQGKLLACIASRP 179
Query: 604 AQVSVVAPMVTSXKAKELEFYLRKIKSKRAK 696
Q V + KELEFYLRKIK+++ K
Sbjct: 180 GQCGRADGYV--LEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 285 bits (698), Expect = 2e-76
Identities = 140/211 (66%), Positives = 163/211 (77%), Gaps = 2/211 (0%)
Frame = +1
Query: 70 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 249
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 250 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 429
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 430 LGRKKGAKLTEAEEAIINKKRSQKTARKYLXKATVLLRLRVLXKSNSTRG--VCWLAWRV 603
LGRKKGAKLT EE I+NKKRS+K +KY + ++ L + +G + +A R
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKY-DERKKNAKISSLLEEQFQQGKLLACIASRP 179
Query: 604 AQVSVVAPMVTSXKAKELEFYLRKIKSKRAK 696
Q V + KELEFYLRKIK+++ K
Sbjct: 180 GQCGRADGYV--LEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 285 bits (698), Expect = 2e-76
Identities = 140/211 (66%), Positives = 163/211 (77%), Gaps = 2/211 (0%)
Frame = +1
Query: 70 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 249
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 250 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 429
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 430 LGRKKGAKLTEAEEAIINKKRSQKTARKYLXKATVLLRLRVLXKSNSTRG--VCWLAWRV 603
LGRKKGAKLT EE I+NKKRS+K +KY + ++ L + +G + +A R
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKY-DERKKNAKISSLLEEQFQQGKLLACIASRP 179
Query: 604 AQVSVVAPMVTSXKAKELEFYLRKIKSKRAK 696
Q V + KELEFYLRKIK+++ K
Sbjct: 180 GQCGRADGYV--LEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 224 bits (548), Expect = 3e-58
Identities = 123/211 (58%), Positives = 146/211 (69%), Gaps = 2/211 (0%)
Frame = +1
Query: 70 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 249
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 250 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 429
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 430 LGRKKGAKLTEAEEAIINKKRSQKTARKYLXKATVLLRLRVLXKSNSTRG--VCWLAWRV 603
LGRKKGAKLT EE I+NKKRS+K +KY + ++ L + +G + +A R
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKY-DERKKNAKISSLLEEQFQQGKLLACIASRP 159
Query: 604 AQVSVVAPMVTSXKAKELEFYLRKIKSKRAK 696
Q V + KELEFYLRKIK+++ K
Sbjct: 160 GQCGRADGYV--LEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 69.3 bits (162), Expect = 2e-11
Identities = 31/70 (44%), Positives = 46/70 (65%)
Frame = +3
Query: 486 EEKSKDSKKILGQGNRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGQRTRVL 665
+++SK +K + + AK+ L EQF G+LLAC+ASRPGQCGRADGY+L G+
Sbjct: 11 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 70
Query: 666 SKKDQV*EGE 695
+K + +G+
Sbjct: 71 LRKIKARKGK 80
Score = 44.0 bits (99), Expect = 7e-04
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +1
Query: 454 LTEAEEAIINKKRSQKTARKYLXKATVLLRLRVLXKSNSTRG--VCWLAWRVAQVSVVAP 627
LT EE I+NKKRS+K +KY + ++ L + +G + +A R Q
Sbjct: 1 LTPEEEEILNKKRSKKIQKKY-DERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADG 59
Query: 628 MVTSXKAKELEFYLRKIKSKRAK 696
V + KELEFYLRKIK+++ K
Sbjct: 60 YVL--EGKELEFYLRKIKARKGK 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,746,690
Number of Sequences: 237096
Number of extensions: 2472518
Number of successful extensions: 4852
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4841
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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