Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_E09
(992 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 3e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.1
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 5.4
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 7.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 7.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect(2) = 3e-04
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 255 GGPXGXPPPPXGGGGXXPPXPXPP 326
GGP PPPP G PP P PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect(2) = 0.080
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 411 PPPPXPPPRXXXPGAPRGXP 470
PPPP PPP G P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect(2) = 0.29
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 414 PPPXPPPRXXXPGAPRGXPXXLPXAPP 494
PPP PPP PG P P PP
Sbjct: 761 PPPPPPP----PGVAGAGPPPPPPPPP 783
Score = 25.0 bits (52), Expect(2) = 3e-04
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 411 PPPPXPPPRXXXPGAPR 461
PPPP PPP G R
Sbjct: 775 PPPPPPPPPAVSAGGSR 791
Score = 24.6 bits (51), Expect(2) = 0.080
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 261 PXGXPPPPXGGGGXXPPXPXP 323
P PPP GG PP P P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768
Score = 23.4 bits (48), Expect(2) = 0.29
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 276 PPPXGGGGXXPPXPXPP 326
PPP G PP P PP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.0
Identities = 19/78 (24%), Positives = 22/78 (28%)
Frame = +3
Query: 261 PXGXPPPPXGGGGXXPPXPXPPXRAXXXXXXXXXXXXXXXXXAXPXXXXXPPPPXPPPRX 440
P P PP PP PP + A P PPP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSK--APPIPSSLPPPAQPAAPV 181
Query: 441 XXPGAPRGXPXXLPXAPP 494
P + P +P PP
Sbjct: 182 KSPPSAPSLPSAVPPMPP 199
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 261 PXGXPPPPXGGGGXXPPXPXPP 326
P G PPPP G PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 255 GGPXGXPPPPXGGGGXXPPXPXPP 326
G P PPPP PP P PP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 411 PPPPXPPPRXXXPGAPRGXP 470
PPPP PPP P P P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 261 PXGXPPPPXGGGGXXPPXPXPP 326
P PPPP G P P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP 27
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.3
Identities = 25/79 (31%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Frame = -2
Query: 493 GGAXGRXXGXPRGAPGXXXRGGGXGGGGXXXXXGXAXXXXXXXXXXXXXXXXXARXGGXG 314
GG G G P G PG GG GG G G GG G
Sbjct: 191 GGFGGGSGGPPPG-PGGFGGFGGFGGEG-HHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Query: 313 XG-GXXPPPPXGGGGXPXG 260
G G P G GG P G
Sbjct: 249 GGLGGFGGGPGGFGGGPGG 267
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 387 AXPXXXXXPPPPXPPPRXXXPGAPRGXPXXLPXAPP 494
A P P PP PP P + P P APP
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.4 bits (48), Expect(2) = 5.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 411 PPPPXPPP 434
PPPP PPP
Sbjct: 307 PPPPPPPP 314
Score = 21.4 bits (43), Expect(2) = 5.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 294 GGXXPPXPXPP 326
GG PP P PP
Sbjct: 303 GGLPPPPPPPP 313
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -2
Query: 499 APGGAXGRXXGXPRGAPGXXXRGGGXG 419
APGGA G G P GAPG G G
Sbjct: 614 APGGAPG---GMPGGAPGGAPGGADNG 637
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 493 GGAXGRXXGXPRGAPGXXXRGGGXGG-GGXXXXXGXA 386
GGA G G RG G RGG GG GG G A
Sbjct: 33 GGARGGGRGGARG--GRGGRGGARGGRGGSSGGRGGA 67
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 7.2
Identities = 21/76 (27%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Frame = +3
Query: 279 PPXGGGGXX--PPXPXPPXRAXXXXXXXXXXXXXXXXXAXPXXXXXPPPPXPPPRXXXPG 452
PP G PP P PP P PP PP P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAA-----PPLPPSAPIAPP 458
Query: 453 APRGXPXXLPXAPPGA 500
P G P P PP A
Sbjct: 459 LPAGMP-AAPPLPPAA 473
Score = 25.8 bits (54), Expect = 9.5
Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Frame = +3
Query: 273 PPPPXGGG--GXXPPXPXPPXRAXXXXXXXXXXXXXXXXXAXPXXXXXP---PPPXPPPR 437
PPPP G PP P RA A P PP P P
Sbjct: 363 PPPPRSAPSTGRQPP-PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421
Query: 438 XXXPGAPRGXPXXLPXAPP 494
P AP P P APP
Sbjct: 422 SLPPSAPPSLP---PSAPP 437
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 7.2
Identities = 20/79 (25%), Positives = 21/79 (26%), Gaps = 1/79 (1%)
Frame = +3
Query: 261 PXGXPPPPXGGGGXXPPXPXPPXRAXXXXXXXXXXXXXXXXXAXPXXXXX-PPPPXPPPR 437
P G PP P PP P P A P PP P P
Sbjct: 1117 PSGAPPVPKPSVAA-PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175
Query: 438 XXXPGAPRGXPXXLPXAPP 494
P P+ P PP
Sbjct: 1176 SGIPPVPKPAAGVPPVPPP 1194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,042
Number of Sequences: 5004
Number of extensions: 13246
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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