Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_E06
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.55 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.55 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.73 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   3.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = -1

Query: 655 GGXASXGXGXGXX--GPGGGXGGPXGXXPGHXGXAXG 551
           GG    G G G    GPGG  GGP G   G  G   G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -1

Query: 652 GXASXGXGXGXXGPGGGXGGPXGXXPGHXG 563
           G    G G G  G GGG GG  G   GH G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -1

Query: 652 GXASXGXGXGXXGPGGGXGGPXGXXPGHXGXAXG 551
           G    G G    GPGG  GGP G   G  G   G
Sbjct: 217 GHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +3

Query: 552 PXAXPX*PGXXPXGPPXPPPGP-XXPXPXPXDAXPP 656
           P A P  P   P  PP PP  P   P P    A PP
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 552  PXAXPX*PGXXPXGPPXPPPGPXXPXPXPXDAXPP 656
            P   P  P      PP PPP    P P P    PP
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 552  PXAXPX*PGXXPXGPPXPPPGPXXPXPXPXDAXPP 656
            P   P  P      PP P P    P P P  A PP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 552  PXAXPX*PGXXPXGPPXPPPGPXXPXPXPXDAXPP 656
            P   P  P      PP P P    P P P  A PP
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 594  PPXPPPGPXXPXPXPXDAXPP 656
            PP PPP    P P P    PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPP 1209



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 558  AXPX*PGXXPXGPPXPPPGPXXPXPXPXDAXPP 656
            A P  P      PP P P    P P P  A PP
Sbjct: 1100 AAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +3

Query: 585  PXG-PPXPPPGPXXPXPXPXDAXPP 656
            P G PP P P    P P P  A PP
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPP 1103


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 552 PXAXPX*PGXXPXGPPXPPPGPXXPXPXPXDAXPP 656
           P + P  P   P  P   PP P    P P    PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 552 PXAXPX*PGXXPXGPPXPPPGP 617
           P   P  PG    GPP PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 573 PGXXPXGPPXPPPGPXXPXPXPXDAXPP 656
           P     GPP PPP P      P    PP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 594 PPXPPPGPXXPXPXPXDAXPP 656
           PP PPPG     P P    PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 564 PX*PGXXPXGPPXPPPGPXXPXPXPXDAXPP 656
           P  PG  P  PP PPPG     P P  A  P
Sbjct: 280 PMGPGGAPLVPP-PPPGMVMASPSPAAATIP 309


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 585 PXGPPXPPPGPXXPXPXPXDAXPP 656
           P  PP PPP P    P      PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 552 PXAXPX*PGXXPXGPPXPPPGP 617
           P   P  PG  P   P PPP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,038,974
Number of Sequences: 5004
Number of extensions: 7278
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)