Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_E04
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.5  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    28   2.0  
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    27   2.6  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.6  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   6.1  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.0  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 234 INYLF-YILHPRIRNEHTQIALTLTTNILID 145
           INYL   IL+P+ RNE      +LTT I +D
Sbjct: 658 INYLISLILYPKARNESWTNTESLTTGITVD 688


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 766 PAVSTKRSLMSTPPHSHWMFATSSP*PSRTMCGYSL 659
           P+VS K++ +++   S+WM  T      +T C Y++
Sbjct: 410 PSVSRKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAI 445


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 165 LMSVLFVCVHCEFEGEE 215
           +M++++VCVHC F  EE
Sbjct: 96  MMTLIYVCVHCGFAFEE 112


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 588 EISRSKHCHHDADELIIGGTDAGVNEYPHMVLL 686
           E S SK+      +L + GTD G+NEY +   L
Sbjct: 131 EFSLSKNIIDQLMDLFVKGTDHGINEYANFDFL 163


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = +3

Query: 417 EYVPPSYDYQSNNGDKKCEDVPADLTSPKTGQKAWDKCIEYQEQLVYPCEKGVALTGEIS 596
           E++   +    N    K  D+ + L+ PK+        ++    + Y  +  + LTG  S
Sbjct: 100 EHLVAGFAKSRNESSLKLWDLNSLLSDPKSSPLMQSSTLDGVSSVCYKKDTPLLLTGSTS 159

Query: 597 RSKH 608
           RS H
Sbjct: 160 RSVH 163


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 252 YSCRLLINYLFYILHPRIRNEHTQIALTLTTNILI 148
           Y C+ L+N + Y+++P IR + T   L L   +L+
Sbjct: 13  YYCKRLLNSVTYMMYPLIR-KRTMKKLLLIVGLLL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,419
Number of Sequences: 5004
Number of extensions: 63342
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)