Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_E02
         (1078 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 20/89 (22%), Positives = 23/89 (25%)
 Frame = +2

Query: 458 PPXGPPPXKXXFXXGAPXXXPPXGGGXVXFXSPXXPPXXXNKXGGGXXXXXXKKKKXXPP 637
           PP  PPP +           PP G G      P  PP   +   G        +    PP
Sbjct: 311 PPPPPPPSRRN------RGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364

Query: 638 PXXXXGXXNXXXXXXXXXXGGXGXPPPPP 724
           P                       P PPP
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +2

Query: 446 PPXFPPXGPPPXKXXFXXGAPXXXPPXGGGXVXFXSPXXPP 568
           PP  P   PP         AP   PP   G V    P  PP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVS-SPPNSPP 272


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 898 GXPAPPPPXXPPXXPRXXGGPRPPXXHXKKK 990
           G P PPPP  P   P     P PP  + KK+
Sbjct: 7   GNPPPPPPP-PGFEPPSQPPPPPPPGYVKKR 36



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 425 PPKXGGXPPXFPPXGPPP 478
           PP  G  PP  PP  PPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +2

Query: 425  PPKXGGXPPXFPPXGPPPXKXXFXXGAPXXXPPXGGGXVXFXSPXXPP 568
            P    G PP  PP   PP       G P   PP     V   S   PP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKP-SVGVPPVPPPSTAPPVPTPSAGLPP 1228


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 907 APPPPXXPPXXPRXXGGPRPP 969
           APPPP  P   PR  GG   P
Sbjct: 98  APPPPRGPLFGPRIGGGHHGP 118


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 904 PAPPPPXXPPXXPRXXGGPRPP 969
           PAP P   PP  P   GGP PP
Sbjct: 744 PAPAPIPVPPPAP-IMGGPPPP 764



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +1

Query: 424 PPQXGGXXPXFSPXXXPPPKNXFFXGXPXKXPPXRGGGCXFXLPXXPPXXXXQXGG 591
           PP      P  +P   P P      G P   PP  G       P  PP      GG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 778 GGGXPXPPPXPLGXXXXXGXGG 713
           GGG   PPP P G     G GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGG 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,834
Number of Sequences: 5004
Number of extensions: 26345
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)