Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_D22
         (1260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 991  APRRXXPXPPXXPXPPPXXPXRPPLFXP 1074
            AP+R  P  P    PP   P  PP   P
Sbjct: 33   APQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 3.2
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = +1

Query: 994  PRRXXPXPPXXPXPPPXXPXRPPLFXPXXPPXPPPRPPXXRPAXPXPXPPP 1146
            P    P P   P   P  P R        PP P   PP   P    P   P
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQR------GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
 Frame = +2

Query: 455 PPPLXG-GFXXPXXXPAXXXXXXXXGGXKLPPCXGXXPPPPP 577
           PPP  G     P    A         G +LPP  G   PP P
Sbjct: 380 PPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP 421



 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +1

Query: 1009 PXPPXXPXPPPXXPXRPPLFXPXXPPXPPPRPPXXRPA 1122
            P  P    PP      PP   P  PP   P      PA
Sbjct: 31   PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA 68


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 539  LPPCXGXXPPPPPPR 583
            +P      PPPPPPR
Sbjct: 1851 IPVSGSPEPPPPPPR 1865


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 116  PPPPXPPP 139
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 118  PPPPXPPP 141
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 563  PPPPPPRXG 589
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 563 PPPPPPRXGXP 595
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 1080 PPXPXXXPPXPSPRG 1124
            PP P   PP PS  G
Sbjct: 338  PPKPAPPPPPPSSSG 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.152    0.537 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,204
Number of Sequences: 438
Number of extensions: 7349
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)