Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_D21
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 31 0.29
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 29 1.2
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 2.7
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 2.7
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.5
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.5
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.1
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 6.1
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 26 6.1
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 26 8.1
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 265 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 444
+II V+N I+D+ + ++C ++W G + +R ++ N ++ K IY +
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305
Query: 445 A 447
A
Sbjct: 306 A 306
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 117 MLAASAGVV--ELSADTSNQDLXEKLYNSILTGDYDSAVRQSLEYESQGQG 263
++ A+AG+ LS + N+D+ K+ L G Y +A ++ QG+G
Sbjct: 91 VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKG 141
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 579 HNTKYNQYLKMSTTTCNCNSRDRVVYGG 662
+++ YN+ M T++C+C+S + YGG
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGG 73
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 357 LSVAD--PQLVAVLHGVPSLVNDQVVNYILDDGA-LXLGSHIPSSD 229
LSV D V VL+GVPS+ + Y + +G + L HIP+ +
Sbjct: 279 LSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREGINIFLDGHIPTEN 324
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 242 FQALTDSTVVVAGEDAVVQFLLEVLV 165
F +T V+V EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = -1
Query: 381 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 271
W+VL +++L+ ++ P V LHGV + VN V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 6.1
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +1
Query: 172 TSRRNCTTASSPATTTVLSVRAWNMRAKXKGSIIQNVVNNLIIDKRRNTMEYCYKLWVGN 351
TS N T +S P T S N+ S Q VVN I D + + + L G+
Sbjct: 371 TSSSNSTNSSIPTTYPSNSTTYQNITTSYPWS--QPVVN--ITDYLSDNGDGHFVL-AGD 425
Query: 352 GQEIVRKYFPLNFRLIMAGNYV 417
G + + ++ +N+ I +G Y+
Sbjct: 426 GNQTIGDFYVMNWTTIASGEYL 447
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 130 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 240
AR SLNY ++ + SRRN ++P S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 268 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 369
+++++ NL I N +EY LW NG I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 106 NTSEKFHFVRSLSDRLQVCNQILRIPL 26
NTSE FH V S+SD + V ++I+ + L
Sbjct: 219 NTSEHFHQVGSVSDGVVVGSKIIDLIL 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,993
Number of Sequences: 5004
Number of extensions: 57225
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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