Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_D19
         (1370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.063
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.50 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.88 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect(2) = 0.063
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 22  PPPPPPPPXXXXP 60
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 23.8 bits (49), Expect = 3.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 525 PPXGAXPPPPP 557
           PP  A PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.8 bits (49), Expect = 3.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 15  PXXXPPPPPPPXXXP 59
           P   PPPPPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 4.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 516 GXPXXPPPPXXPPPP 472
           G    PP P  PPPP
Sbjct: 333 GDSDTPPKPAPPPPP 347



 Score = 23.4 bits (48), Expect(2) = 0.063
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 1   PPXPXXXPPPPPP 39
           PP P   PPPPPP
Sbjct: 338 PPKPA--PPPPPP 348



 Score = 23.0 bits (47), Expect = 6.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 1144 PPPPPXGXPPPXXGGP 1097
            PP P    PPP   GP
Sbjct: 338  PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 5   PPXPXXXPPPPPPP 46
           PP P    PPPPPP
Sbjct: 338 PPKPA---PPPPPP 348



 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 882 PXXPXPPPPP 853
           P  P PPPPP
Sbjct: 338 PPKPAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 22   PPPPPPPP 45
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 3.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1281 PPPPPPP 1261
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1281 PPPPPPP 1261
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.88
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 121 GPXGAXPXGGGXGXXXGGXXXGXXXGGGGGG 29
           GP  +   G   G   G    G   GGGGGG
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 24.6 bits (51), Expect = 2.0
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = -2

Query: 121 GPXGAXPXGGGXGXXXGGXXXGXXXGGGGGGGXXXGXG 8
           G  G+   GG      GG        GGGGGG     G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 1156 PPXXPPPPPXGXPPPXXGGPPP 1091
            P   P  P  G PP    GPPP
Sbjct: 27   PHQSPQAPQRGSPPNPSQGPPP 48



 Score = 25.0 bits (52), Expect = 1.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 5  PPXPXXXPPPPPPPXXXP 58
          PP P   PPP  PP   P
Sbjct: 39 PPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 2.7
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 27  PPPPPPPXXXPXXXPPXXXPXPPPXGXAPXGP 122
           P P P P   P   P    P  P  G  P GP
Sbjct: 21  PGPQPSPHQSPQA-PQRGSPPNPSQGPPPGGP 51



 Score = 23.8 bits (49), Expect = 3.5
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +3

Query: 15  PXXXPPPPPPPXXXPXXXPPXXXPXPPPXGXAPXGP 122
           P   P P   P       PP     PPP G  P  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP-GGPPGAP 55



 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 1144 PPPPPXGXPPPXXGGPPP 1091
            PP P  G PP    G PP
Sbjct: 39   PPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 9   PXPXXXPPPPPPPXXXPXXXP 71
           P P   PPP  PP   P   P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 888 GGPXXPXPPPPPGGXRXXGPA 826
           G P  P   PPPGG     P+
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPS 57



 Score = 23.4 bits (48), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 1  PPXPXXXPPPPPPP 42
          PP P   PPP  PP
Sbjct: 39 PPNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 8.2
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +1

Query: 4   PXPXXXPPPPPPPPXXXXPXPXPXXXXPXPPPXAXP 111
           P P   P   P  P    P        P  PP A P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 22   PPPPPPPP 45
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.159    0.592 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 359,839
Number of Sequences: 438
Number of extensions: 15783
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 47544948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)