Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_D18
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 96 7e-21
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.54
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.95
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.9
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.1
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.7
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 26 8.8
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 8.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.8
>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 95.9 bits (228), Expect = 7e-21
Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Frame = +3
Query: 96 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 272
M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ + VD A GR K Y + G +
Sbjct: 1 MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59
Query: 273 RRMGESDDCIVRLTKKDGIL 332
R GESDDCI RLT +DG+L
Sbjct: 60 RSKGESDDCINRLTTQDGLL 79
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 421 PNXPPPXXPPPXXPXXXXPPPXXXP 495
P PPP PPP PPP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 433 PPXXPPPXXPXXXXPPPXXXPXGPXP 510
PP PPP P PP P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 828 PXXXTPXXXPPPXAXPPXXXPPP 896
P P PPP PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.95
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Frame = +1
Query: 421 PNXPPPXXPP----PXXPXXXXPPPXXXPXGPXPXPFXGVXGXPXXK 549
P+ PPP P P P PP P G P P V P K
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPK 1106
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = +1
Query: 421 PNXPPPXXPPPXXPXXXXPPPXXXPXGPXPXPFXGVXGXPXXKKXXXGXXPPP 579
P P P PP PP P G P P V P P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +1
Query: 421 PNXPPPXXPPPXXPXXXXPPPXXXPXGPXPXPFXGVXGXP 540
P P P PP PP P G P P V P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 815 LPPXPPXKXPXXXPPPSGXAPXXXPPXXXXRKLPSPXPIXG 937
+PP PP P PS P PP P P P G
Sbjct: 1188 VPPVPPPSEAPPVPKPSVGVPPVPPPSTAP---PVPTPSAG 1225
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +1
Query: 421 PNXPPPXXPPP-XXPXXXXPP-PXXXPXGPXPXPFXGVXGXP 540
P PPP PP P PP P P P P G+ P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = +2
Query: 815 LPPXPPXKXPXXXPPPSGXAPXXXPPXXXXRKLPSP 922
+PP PP P PS P P +P+P
Sbjct: 1207 VPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 25.8 bits (54), Expect = 8.8
Identities = 19/79 (24%), Positives = 20/79 (25%), Gaps = 3/79 (3%)
Frame = +1
Query: 421 PNXPPPXXPPPXXPXXXXPPPXXXP---XGPXPXPFXGVXGXPXXKKXXXGXXPPPXTKX 591
P P P P P PP P P P P G+ P PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 592 XKKXXXXEXFXXPPXXXXP 648
K PP P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPP 1218
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 431 PPPXPPXPXXPXXXXXPPPXFPXA 502
PPP PP P PPP P A
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +2
Query: 431 PPPXPPXPXXPXXXXXPPPXFPXAPXXXXXGGXXXXQXXKXXXXVXXPPP 580
PPP PP P P P P AP GG PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP---IMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Frame = +1
Query: 421 PNXPPPXX--PPPXXPXXXXPPPXXXPXGPXPXP 516
P PPP P P PPP GP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 421 PNXPPPXXPPPXXPXXXXPPPXXXPXGPXPXP 516
P PP P P PPP GP P P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 818 PPXPPXKXPXXXPPPSGXAPXXXPP 892
PP P P PPP G A PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 226 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 83
P+ A+T TE W++A+ +A F S C Y+R
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYLR 529
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +1
Query: 421 PNXPPPXXPP-PXXPXXXXPPPXXXPXGPXPXPFXGVXGXP 540
P P P PP P P P P P P P + G P
Sbjct: 99 PEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEP 139
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Frame = +2
Query: 818 PPXPPXKXPXXXPP---PSGXAPXXXPPXXXXR-----KLPSPXPIXG 937
PP PP P PP P+ P PP +P+P P+ G
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTG 1930
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = -3
Query: 247 LDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 83
L VS+ S ++ W+ W L E F+ + TN+ + Y+R
Sbjct: 170 LAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCYIR 224
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 196 SCTEAWSLAWMRRLLAEHFLGQYKST 119
S T+A SL W + +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/58 (27%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Frame = +1
Query: 412 KXKPNXPPPXXPPPXXPXXXXPPPXXXPXGPXPXPFXGVXGXPXXKK--XXXGXXPPP 579
K + PP P P P PP P P P P K PPP
Sbjct: 117 KSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,197
Number of Sequences: 5004
Number of extensions: 45012
Number of successful extensions: 295
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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