Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_D11
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    81   3e-16
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   6.3  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   8.3  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   8.3  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +2

Query: 95  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 262
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S    D KF RNQ+F  +G ++  +Q
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 9    HYHLTIGNSLRFVASVLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNP 188
            H+H+  G  +         D K+ E+ S+   ++I    TK  KLT    K++ R     
Sbjct: 977  HWHVEAGK-VTGKGKTAVDDGKF-EDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARER 1034

Query: 189  PLAWIQN 209
             LAW+Q+
Sbjct: 1035 ELAWLQS 1041


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 15  HLTIGNSLRFVASVLSSDSKWIENSSKWQSQRIIQIITKTAKL 143
           HLT    + F  + L S S+WI    K  S+ I   +T TA++
Sbjct: 291 HLTELTDVSFQGAFLVSSSEWINFFKKRGSKLISLELTDTARI 333


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 103 LCHFDEFSIHFESEDRTEATNLKEFP 26
           +CHF+E SI  ES++   A  +   P
Sbjct: 1   MCHFNELSIEIESKNLRSAKKIFHCP 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,993
Number of Sequences: 5004
Number of extensions: 53796
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)