Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_D10
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    47   3e-06
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   6.1  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 27/76 (35%), Positives = 42/76 (55%)
 Frame = +3

Query: 264 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 443
           GDT   SF+L      ++K   G  V ++++G+N  ED + GY      Q++ VC+ +  
Sbjct: 35  GDTPT-SFTLTEVSQRVQKLTKGA-VYAIRVGDNEFEDIKAGYLGKLEDQLDEVCDLIGN 92

Query: 444 DPKLSNGFNVMGFSQG 491
           +  LSNGF  +G SQG
Sbjct: 93  EDSLSNGFYALGLSQG 108


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 315 EKNIPGV-YVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAADPKLSNGFNVMGFSQG 491
           EKN+    +V S+  GN T+ED  +     P  Q  Y  +   AD K S   ++  F   
Sbjct: 402 EKNVDNQEFVTSISNGNQTLEDTSHSPQTQPPFQPPYPSK---ADEKNSYHSDLYNFGSS 458

Query: 492 MSV 500
           ++V
Sbjct: 459 LTV 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,121
Number of Sequences: 5004
Number of extensions: 69072
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)