Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_D10
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    29   3.7  
03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...    28   8.5  

>07_03_1546 +
           27602598-27602917,27602995-27603052,27603130-27603252,
           27603896-27603992,27604095-27604131,27604244-27604349,
           27604547-27604604,27604705-27604802,27604911-27605030,
           27605622-27605667,27606336-27606522,27606747-27607263,
           27607361-27607453,27608101-27608286,27608364-27608574,
           27609263-27609387,27609518-27609664,27610114-27610236,
           27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 481 KPMTLNPFDSFGSAANFSHTYSTWRFGFMKYPFSKSSTVLLPIWRDRT*TPGMFFS 314
           +P+   P  S GS+A    +Y TW   F     + SS  +  +W  R   P   FS
Sbjct: 159 EPVVFPPLKSVGSSAQAEISYLTWNPKFQHILATASSNGMTVVWDLRNQKPLTSFS 214


>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 505 RAVVQRCGHKLPQIKNMVSLGGQH 576
           RAVV+ C    P +KN +SLGG H
Sbjct: 129 RAVVEFCDDG-PPVKNFISLGGPH 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,968,856
Number of Sequences: 37544
Number of extensions: 421886
Number of successful extensions: 776
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)