Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_D08
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    32   0.62 
AC024214-13|AAM97984.1|  296|Caenorhabditis elegans Collagen pro...    30   1.9  
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    29   4.4  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    29   4.4  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    29   5.8  

>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
            T16G12.5 protein.
          Length = 1142

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 173  PKEDNSLNTLAESAKKTIEELREKVESALAP----ETVKKNFGTMVDSFNEFYKNLKPAE 340
            P ED S N   + AKK + +L+  V    AP     T ++ +   VD  NE+ + L   E
Sbjct: 834  PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEELHDDE 893


>AC024214-13|AAM97984.1|  296|Caenorhabditis elegans Collagen
           protein 106 protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = -3

Query: 873 GXPXRXGXQGXXXSEGKX--EGAPXTQSPLFXPGGXGGXXXXARKTPPXP 730
           G P   G QG     G+    G P  +   + PG  G      R+ PP P
Sbjct: 174 GGPGETGPQGHQGKPGRAGPRGPPGAKGQTYLPGSAGHPGNSGRRGPPGP 223


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 816 GAPXTQSPLFXPGGXGGXXXXARKTPPXPSP 724
           GAP   S  +  GG GG    A   PP P P
Sbjct: 38  GAPPCSSSSYATGGGGGSYAAAPALPPPPPP 68


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 816 GAPXTQSPLFXPGGXGGXXXXARKTPPXPSP 724
           GAP   S  +  GG GG    A   PP P P
Sbjct: 38  GAPPCSSSSYATGGGGGSYAAAPALPPPPPP 68


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 179 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 349
           E++S   L    K TI   +      L  +  K  FG ++D FN  + NL+ ++  K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 179 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 349
           E++S   L    K TI   +      L  +  K  FG ++D FN  + NL+ ++  K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 873 GXPXRXGXQGXXXSEGKXEGAPXTQSPLFXPGGXGGXXXXARKTPP 736
           G P + G  G     G+ +GAP  Q P   PG  G      ++ PP
Sbjct: 152 GPPGQDGIPGNPGRNGE-DGAPGPQGPSGPPGPPGQPGQPGQRGPP 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,227,561
Number of Sequences: 27780
Number of extensions: 266214
Number of successful extensions: 799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)