Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_D07
         (974 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.026
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.99 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   3.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 953 PPXTXXXPXXXPPPPXXGXXFSSPPPPPXPXXDLXXG 843
           PP         PPPP  G   + PPPPP P   +  G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
 Frame = -1

Query: 953 PPXTXXXPXXXPPP---PXXGXXFSSPPPPPXPXXDLXXGXXXXP 828
           PP     P   P P   P        PPPPP P      G    P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 920 PPPPXXGXXFSSPPPPPXP 864
           PPPP  G    S PPPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 29.1 bits (62), Expect = 0.99
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 920 PPPPXXGXXFSSPPPPPXP 864
           PPPP      S PPPPP P
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 932 PXXXPPPPXXGXXFSSPPPPPXP 864
           P   PPPP     F  P  PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.0 bits (47), Expect(2) = 3.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 893 FSSPPPPPXP 864
           +S PPPPP P
Sbjct: 368 YSPPPPPPPP 377



 Score = 22.6 bits (46), Expect(2) = 3.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 887 SPPPPPXPXXDLXXGXXXXPXXXK 816
           SPPPPP P   L       P   K
Sbjct: 369 SPPPPPPPPELLNHSPKSRPLGDK 392


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 953 PPXTXXXPXXXPPPPXXGXXFSSPPPPPXP 864
           PP +   P    P       ++ PPPPP P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = -1

Query: 953 PPXTXXXPXXXPPPPXXGXXFSSPPPPPXPXXDLXXGXXXXP 828
           PP          PP   G   SS PPPP P      G    P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,871
Number of Sequences: 5004
Number of extensions: 17994
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)