Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_D06
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809...    30   2.2  
05_04_0204 - 19022329-19023990                                         30   2.9  
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513...    29   3.8  
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145...    29   3.8  
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    29   5.0  
05_05_0173 + 22956927-22958615                                         28   8.7  
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442...    28   8.7  

>08_02_0702 -
           20179838-20180040,20180397-20180464,20180642-20180970,
           20181058-20181258,20181369-20181501,20181576-20181619,
           20181694-20181753,20181872-20181931,20182840-20182921,
           20183292-20183368,20183649-20183726,20183997-20184143,
           20184189-20184254,20184376-20184417,20184513-20184992
          Length = 689

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +2

Query: 479 GSTEACSSTLLLPRASTEP---TARVSTCPLLTRSIPTSSLTAMSSVKPL**R*LKPPRN 649
           GS  A ++ L  P +++       R+STC   +R +    + A  S  P   R L PPR+
Sbjct: 31  GSAAAAAAALDEPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRRRLLPPPRS 90

Query: 650 --PGPLEILRPSP 682
             P P + L P P
Sbjct: 91  PPPAPTKSLSPQP 103


>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 274 IEKSCDKYMNVDVVKQFMEMYKMGMLPRGETF 369
           + K CD++  + VVK F +M K G+ P   TF
Sbjct: 355 MRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTF 386


>06_03_0613 +
           22748223-22749513,22750046-22750179,22751066-22751309,
           22751401-22751609,22751691-22751740,22751933-22752053,
           22752138-22752383
          Length = 764

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -1

Query: 419 TRKTLTASSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAIS 252
           +R TL +  +W  L   K+    ++ +L ++ NCL  +   + S+++S L SL +S
Sbjct: 118 SRLTLASLGVWGELPGAKLHRLQALRVLNLTGNCLYGAVPEHFSRMYS-LQSLVLS 172


>02_01_0223 +
           1453478-1453750,1455788-1456018,1456066-1456200,
           1457918-1457971,1458417-1458482,1458593-1458679,
           1459338-1459394,1459470-1459500,1459577-1459634,
           1459710-1459761,1459881-1459917,1460008-1460210,
           1460556-1460633,1460683-1460853,1461126-1461239
          Length = 548

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 630 HLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARG 514
           H HH G   D A   EV  D V +      A G+V+ RG
Sbjct: 24  HHHHDGAAGDSAAAAEVPQDKVVAAAAAAAAAGNVQRRG 62


>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +1

Query: 145 VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQF 324
           +F  + +  L  K +E      L  +++ T F D+ ++ ++Y      +K  N DVV   
Sbjct: 160 IFLLKSLDELFQKGREAVDFPALQELMEKTGF-DMDDVVRKYIRYTLNEKPFNPDVVVDL 218

Query: 325 MEMYKMGMLPRGETFVHTNEL 387
           + + K  ML   E     NE+
Sbjct: 219 IHLRKASMLEDAEVAEILNEI 239


>05_05_0173 + 22956927-22958615
          Length = 562

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 557 PLLTRSIPTSSLTAMSSVKPL**R*LKPPRNPGPLEILRP 676
           P+L+ S P+SS  A +   PL    L PP +P P E++RP
Sbjct: 41  PMLSSS-PSSS-AASADAPPLETEPLHPPYSPPPAELVRP 78


>04_04_0239 -
           23843235-23843243,23843334-23844047,23844138-23844287,
           23844389-23844601,23844697-23844811,23844919-23846300,
           23847217-23847279
          Length = 881

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -3

Query: 693 SSVTGDGRS-ISRGPGFLGGFSHLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEAR 517
           SS + DG S  S G G   G   L+ K  T+ MAV+    +D+  SG  ++L +  V   
Sbjct: 190 SSGSADGSSGSSSGRGQTLG--SLNIKNDTELMAVSASNPLDMHNSGSTKSLGLKGVLLD 247

Query: 516 GSKSVDEHASVDPF 475
             K+  EH S  P+
Sbjct: 248 DIKAQAEHVSGYPY 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,638,985
Number of Sequences: 37544
Number of extensions: 446041
Number of successful extensions: 1092
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)