Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_D04
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 268 3e-72
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 256 1e-68
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 121 8e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 1e-21
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 1e-05
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.038
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 10.0
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 268 bits (657), Expect = 3e-72
Identities = 121/222 (54%), Positives = 160/222 (72%)
Frame = +3
Query: 48 IVNPLFEKRPKNFAIGQXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 227
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 28 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 87
Query: 228 LDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 407
LD +A+ FK+L+KYRPE+ RPNT+R G NT+T+L
Sbjct: 88 LDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRL 147
Query: 408 VEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTN 587
VE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +
Sbjct: 148 VETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVD 207
Query: 588 VESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNA 713
V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+A
Sbjct: 208 VNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDA 249
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 256 bits (628), Expect = 1e-68
Identities = 121/222 (54%), Positives = 160/222 (72%)
Frame = +3
Query: 48 IVNPLFEKRPKNFAIGQXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 227
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 28 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 87
Query: 228 LDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 407
LD +A+ FK+L+KYRPE+ RPNT+R G NT+T+L
Sbjct: 88 LDSQSARQAFKLLDKYRPESTEVTK--------------------RPNTVRHGVNTITRL 127
Query: 408 VEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTN 587
VE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +
Sbjct: 128 VETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVD 187
Query: 588 VESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNA 713
V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+A
Sbjct: 188 VNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDA 229
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 121 bits (291), Expect = 8e-28
Identities = 52/80 (65%), Positives = 66/80 (82%)
Frame = +3
Query: 48 IVNPLFEKRPKNFAIGQXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 227
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 131 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 190
Query: 228 LDKTTAKGLFKILEKYRPET 287
LD +A+ FK+L+KYRPE+
Sbjct: 191 LDSHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (240), Expect = 1e-21
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = +3
Query: 48 IVNPLFEKRPKNFAIGQXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 227
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 131 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 190
Query: 228 LD 233
LD
Sbjct: 191 LD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 1e-07
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +3
Query: 375 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 548
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 549 VHRKTCTCLALTNVESGDRASFSKVVEAIK 638
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = +3
Query: 372 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 551
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 552 HRKTCTCLALTNVESGDRASFSKVVEAIK 638
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.038
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 329 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 210
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 202 LRSTNLPRHWTRLQLRA 252
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,432
Number of Sequences: 27780
Number of extensions: 296044
Number of successful extensions: 877
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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