Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_D02
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal prote... 94 1e-19
AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal pro... 94 1e-19
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 32 0.46
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 32 0.61
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 31 1.4
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.3
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 10.0
U61946-2|AAC24387.1| 341|Caenorhabditis elegans Serpentine rece... 28 10.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 10.0
AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinas... 28 10.0
>U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 39 protein.
Length = 51
Score = 94.3 bits (224), Expect = 1e-19
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = +2
Query: 80 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 232
MSA K IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal
protein L39 protein.
Length = 51
Score = 94.3 bits (224), Expect = 1e-19
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = +2
Query: 80 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 232
MSA K IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 32.3 bits (70), Expect = 0.46
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 718 YPPQXGDXPRTXPXTXPPPK-XPXTPXQGPRXLAXFPIGXP 837
+PP G P P T PPP+ P P +G + IG P
Sbjct: 871 FPPNEGSSPGILPSTNPPPRNNPYAPPEGAPRVPNRLIGKP 911
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 674 GXPASTSPQ-RPGNX-VIHHXQGIXPGPTL*PXRXPKXPQPLTR 799
G P P+ PGN HH Q P P+ P + P PQ TR
Sbjct: 254 GLPGPQGPKGEPGNPGTCHHCQNRAPAPSEAPGKAPPPPQDYTR 297
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 31.5 bits (68), Expect = 0.81
Identities = 27/99 (27%), Positives = 33/99 (33%), Gaps = 1/99 (1%)
Frame = -2
Query: 842 GGGXPMGKXASXRGPWXGVXGXLGGGXVXGXVRGXSPXCGG*PX-YPAFXGRWMPAXRSR 666
GGG G G G GG V +P GG P P+F S
Sbjct: 117 GGGGGGGCGGGGGGGGGGYASGGSGGFASAPVSLPAPSYGGPPPPAPSFSHAPSGGYSSG 176
Query: 665 XTGGQGVSEGGRXEGAQYANRLSPXVGRFINAEKTSHTS 549
+ G G S GG G YA + ++ S TS
Sbjct: 177 GSSGGGYSSGGSSGGGGYAGGAAAAGATAAQVDEASETS 215
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +1
Query: 724 PQXGDXPRTXPXTXPPPKXPXTPXQGPRXLAXFPIGXPPPXXTLPKXRP 870
P P P PPP P +P GP + P PPP P P
Sbjct: 76 PSPSCCPYVPPAPLPPPPPPASPCCGPSPVPA-PCCPPPPAPAAPCCPP 123
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Frame = +1
Query: 721 PPQXGDXPRTXPXTXP-----PPKXPXTPX-QGPRXLAXFPIGXPPP 843
PP PR P T P PP+ P +P + P PI PPP
Sbjct: 150 PPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +1
Query: 721 PPQXGDXPRTXPXTXPPPKXPXTPXQGPRXLAXFPIGXPPPXXTLPKXRP 870
PP PRT P PPP+ P P P P P P P P
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRP--PMTPPSPQRRPPRTPPSPEPRNPPRTP 187
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +1
Query: 721 PPQXGDXPRTXPXTXPPPKXPXTPXQGPRXLAXFPIGXPPPXXTLPKXRP 870
PP+ + P PPP+ P TP P+ P P P+ P
Sbjct: 127 PPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPP 176
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +1
Query: 694 PXKAG*XGYPPQXGDXPRTXPXTXPPPKXPXTPXQGPRXLAXFPIGXPPPXXTLPKXRP 870
P AG PP+ G P P PP P Q G PPP + P
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 340
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +1
Query: 694 PXKAG*XGYPPQXGDXPRTXPXTXPPPKXPXTPXQGPRXLAXFPIGXPPPXXTLPKXRP 870
P AG PP+ G P P PP P Q G PPP + P
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 361
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +1
Query: 694 PXKAG*XGYPPQXGDXPRTXPXTXPPPKXPXTPXQGPRXLAXFPIGXPPPXXTLPKXRP 870
P AG PP+ G P P PP P Q G PPP + P
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 346
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +1
Query: 724 PQXGDXPRTXPXTXPPPK--XPXTPXQGPRXLAXFPIGXPPPXXTLPKXRP 870
P + P+T P T PPK P T P PP T PK P
Sbjct: 372 PPRTEPPKTEPPTTEPPKIEPPRTEPPKTEPPPTEPPKTEPPKTTPPKTEP 422
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -3
Query: 214 SPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQKQSQILRN 35
S PLSVIS+S S P+ + +++ ++ + + +G + E SC + RN
Sbjct: 19 SQYEPLSVISSSWSMWSPWSFCSNNLMIRVRACSTVRGYKCLGHNKEFQSCNSPPK--RN 76
Query: 34 SL 29
SL
Sbjct: 77 SL 78
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +1
Query: 715 GYPPQXGDXPRTXPXTXP-PPKXPXTPXQGPRXLAXFPIGXPPPXXTLPKXR 867
GY Q P P P PP P TP PR G PP P R
Sbjct: 255 GYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR 306
>U61946-2|AAC24387.1| 341|Caenorhabditis elegans Serpentine
receptor, class h protein220 protein.
Length = 341
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 268 FYYIT-FNTFTSLQLELCPSPVTPLSVISNSVSCAHP 161
FYYIT F F + + + P P I S+ C HP
Sbjct: 147 FYYITAFLFFYPIYITMPPGPEHRKDFILKSIPCLHP 183
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +1
Query: 715 GYPPQXGDXPRTXPXTXP-PPKXPXTPXQGPRXLAXFPIGXPPPXXTLPKXR 867
GY Q P P P PP P TP PR G PP P R
Sbjct: 265 GYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR 316
>AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinase
protein 34 protein.
Length = 311
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -3
Query: 229 LELCPSPVTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFALNNKR 95
L++ P P++PLSV++N PY PL GS FGQ AL + R
Sbjct: 4 LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNR 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,145,851
Number of Sequences: 27780
Number of extensions: 282301
Number of successful extensions: 824
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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