Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C24
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.59 
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   6.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   9.7  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect(2) = 0.59
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 901 PAPPPPXPP 927
           PAPPPP PP
Sbjct: 236 PAPPPPPPP 244



 Score = 23.0 bits (47), Expect(2) = 0.59
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 898 PPAPPPPXP 924
           PP PPPP P
Sbjct: 189 PPPPPPPPP 197


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 124 GIVGSGLIGRSWAXLFASVGXQVTVYDVV 210
           GI+G G IG   + L  ++G  V  YD++
Sbjct: 199 GIIGYGHIGSQLSVLAEAMGLHVVYYDIL 227


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 596 SXXPRQPXXNXPXPSRXPPPPSXXP 670
           S  P  P    P PS+ PP PS  P
Sbjct: 148 SIPPPSPASAPPIPSKAPPIPSSLP 172


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 9.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 901 PAPPPPXPP 927
           P PPPP PP
Sbjct: 775 PPPPPPPPP 783



 Score = 20.6 bits (41), Expect(2) = 9.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 898 PPAPPPP 918
           PP PPPP
Sbjct: 762 PPPPPPP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,518
Number of Sequences: 5004
Number of extensions: 19017
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)