Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_C24
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 29 4.0
11_06_0610 - 25449085-25453284 29 6.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 6.9
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 29 6.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 24 7.2
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694... 24 7.9
04_04_0057 + 22410167-22411330 24 8.0
08_02_1256 + 25645085-25645396 24 9.6
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +2
Query: 557 PXVXPCPXXLDXASXXPRQPXXNXPXPSRXPPPP 658
P P P + P P + P PS PPPP
Sbjct: 380 PHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPPPP 413
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 557 PXVXPCPXXLDXASXXPRQPXXNXPXPSRXPPPPSXXP 670
P V P P + +S P + P P PPPP P
Sbjct: 1131 PTVKPLPPPVPVSSPPPPEKSPPPPAPVILPPPPIKSP 1168
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 557 PXVXPCPXXLDXASXXPRQPXXNXPXPSRXPPPP 658
P P P ++ + P P P PS PPPP
Sbjct: 92 PPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPP 125
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 545 LTXXPXVXPCPXXLDXASXXPRQPXXNX-PXPSRXPPPPSXXP 670
L+ P + P P AS P P N P PS PPPP P
Sbjct: 74 LSFDPSLIPTPA----ASTPPASPTANASPPPSLPPPPPPLRP 112
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 23.8 bits (49), Expect(2) = 7.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 901 PAPPPPXPP 927
P+PPPP PP
Sbjct: 600 PSPPPPPPP 608
Score = 23.0 bits (47), Expect(2) = 7.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 898 PPAPPPPXP 924
PP PPPP P
Sbjct: 587 PPPPPPPLP 595
>01_06_0638 -
30768546-30768779,30768908-30769017,30769301-30769490,
30769842-30769914,30770007-30770063,30770147-30770211,
30770278-30770488,30770568-30770650,30771123-30771158,
30771611-30771713,30771813-30771899,30772210-30772403
Length = 480
Score = 23.8 bits (49), Expect(2) = 7.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 898 PPAPPPPXP 924
PP+PPPP P
Sbjct: 3 PPSPPPPPP 11
Score = 23.0 bits (47), Expect(2) = 7.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 901 PAPPPPXPP 927
P PPPP PP
Sbjct: 6 PPPPPPYPP 14
>04_04_0057 + 22410167-22411330
Length = 387
Score = 23.8 bits (49), Expect(2) = 8.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 901 PAPPPPXPP 927
P+PPPP PP
Sbjct: 206 PSPPPPPPP 214
Score = 23.0 bits (47), Expect(2) = 8.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 898 PPAPPPPXP 924
PP PPPP P
Sbjct: 181 PPPPPPPPP 189
>08_02_1256 + 25645085-25645396
Length = 103
Score = 23.8 bits (49), Expect(2) = 9.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 901 PAPPPPXPP 927
P+PPPP PP
Sbjct: 71 PSPPPPPPP 79
Score = 23.0 bits (47), Expect(2) = 9.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 898 PPAPPPPXP 924
PP PPPP P
Sbjct: 63 PPPPPPPLP 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,471,969
Number of Sequences: 37544
Number of extensions: 233357
Number of successful extensions: 7417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5953
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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